View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20529_low_12 (Length: 344)

Name: NF20529_low_12
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20529_low_12
NF20529_low_12
[»] chr2 (1 HSPs)
chr2 (2-295)||(41027367-41027660)
[»] chr4 (3 HSPs)
chr4 (16-216)||(22898427-22898627)
chr4 (16-216)||(22950095-22950295)
chr4 (16-195)||(53328609-53328788)
[»] chr7 (2 HSPs)
chr7 (47-210)||(39954984-39955147)
chr7 (16-210)||(10575267-10575461)
[»] chr8 (1 HSPs)
chr8 (16-210)||(14261140-14261334)
[»] chr3 (5 HSPs)
chr3 (16-210)||(24919994-24920188)
chr3 (95-210)||(21584784-21584899)
chr3 (16-210)||(25084918-25085112)
chr3 (16-150)||(24923568-24923702)
chr3 (16-210)||(24981926-24982120)
[»] chr5 (1 HSPs)
chr5 (100-198)||(26358740-26358838)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 41027660 - 41027367
Alignment:
Q  2 gcatctcgaagaatattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaac 101  Q
    ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41027660 gcatcacgaataacattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaac 41027561  T
Q  102 gacgaatcgcaggcttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41027560 gacgaatcgcaggcttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacg 41027461  T
Q  202 tccagacatcttgattcgaaagaaaaattctacaagacaaagataattaattaataattaatactaattgagttagaaaactggaaaattgatt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41027460 tccagacatcttgattcgaaagaaaaattctacaagacaaagaaaattaattaataattaatactaattgagttagaaaactggaaaattgatt 41027367  T

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Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 22898627 - 22898427
Alignment:
Q  16 attctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggc 115  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||||| || ||||||||||||||||||||||| || | |||||||||||| |||    
T  22898627 attctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggc 22898528  T
Q  116 ttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacatcttga 215  Q
    || || ||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||    
T  22898527 tttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacatcttga 22898428  T
Q  216 t 216  Q
    |    
T  22898427 t 22898427  T

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Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 22950295 - 22950095
Alignment:
Q  16 attctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggc 115  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||||| || ||||||||||||||||||||||| || | |||||||||||| |||    
T  22950295 attctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggc 22950196  T
Q  116 ttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacatcttga 215  Q
    || || ||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||    
T  22950195 tttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacatcttga 22950096  T
Q  216 t 216  Q
    |    
T  22950095 t 22950095  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 53328788 - 53328609
Alignment:
Q  16 attctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggc 115  Q
    |||||| | ||||||||| |  |||||||| || ||||| ||||| || || || ||||||||||| || || |  | ||| | ||||||||||||||||    
T  53328788 attctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaatcgcaggc 53328689  T
Q  116 ttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttt 195  Q
    || || ||||| || |||||||| || || ||||||||||||||||| ||||| |||||||| || |||||||| |||||    
T  53328688 tttgtgattccctggatgttatcgcgcagaaccttacggtgtcgtttcgctccaccctttcctaaaccctttcctccttt 53328609  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 39954984 - 39955147
Alignment:
Q  47 gtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggcttcgtaattccttgaatgttatcacgaagca 146  Q
    |||||||||||||| | |||||| || | |||||| || || |  | ||| | |||||||||||||||||| || || ||||| ||||| || ||||| |    
T  39954984 gtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaa 39955083  T
Q  147 ccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacat 210  Q
    |||| | ||| |  ||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  39955084 cctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacat 39955147  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 10575461 - 10575267
Alignment:
Q  16 attctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggc 115  Q
    ||||||||| |||||||||||||| || | ||| || || |||||||| || || || |  ||||| |||||||| |  ||||| ||||||||||| |||    
T  10575461 attctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctggc 10575362  T
Q  116 ttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacat 210  Q
    || || |||||||| ||||| ||||| || ||||| || ||||  ||||| || |||||||| ||||| || || || |||||||| ||||||||    
T  10575361 tttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccacgaccagacat 10575267  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 14261140 - 14261334
Alignment:
Q  16 attctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggc 115  Q
    ||||||||| || ||||||||||| || || || ||||| || ||||| ||||| || | |||||| |||||||| |  || || || |||||||| |||    
T  14261140 attctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctggc 14261239  T
Q  116 ttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacat 210  Q
    || || |||||||| ||||| ||||||||||| || || ||||  ||||| ||||||||||| |||||||| || || |||||||| || |||||    
T  14261240 tttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctccctttcctaatcccttacctccctttccacgacctgacat 14261334  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 24919994 - 24920188
Alignment:
Q  16 attctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggc 115  Q
    |||||| || ||||||||||| || || |  || ||||| |||||||||||||| || | |||||| || ||||| | |||||| |||||||| ||||||    
T  24919994 attctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggc 24920093  T
Q  116 ttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacat 210  Q
    || || || || || |||||||||||||| || || |  || |  ||||| |||||||||||||||||||| || || |||||||| ||||||||    
T  24920094 ttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcccaatcccttacctccctttccacggccagacat 24920188  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 21584784 - 21584899
Alignment:
Q  95 gccaaacgacgaatcgcaggcttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccacctt 194  Q
    ||||| ||||||||||| ||||| || ||||| ||||||||||||||||| || || | |||||  ||||| ||||||||||| | |||||| || || |    
T  21584784 gccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctccct 21584883  T
Q  195 ttccacgtccagacat 210  Q
    ||||||| || |||||    
T  21584884 ttccacgacctgacat 21584899  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 25085112 - 25084918
Alignment:
Q  16 attctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggc 115  Q
    ||||||||| ||||||||||| || || |  || ||||| || |||||||| || || | |||||| || ||||| |  ||||| | |||||| ||||||    
T  25085112 attctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgccaatctacgaatggcaggc 25085013  T
Q  116 ttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacat 210  Q
    || || || || || |||||||||||||| ||||| |  || |  ||||| |||||||||||||||||||| || || |||||||| || |||||    
T  25085012 ttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttccacgacctgacat 25084918  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 24923568 - 24923702
Alignment:
Q  16 attctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggc 115  Q
    ||||||||| ||||||||||| || || |  || ||||| ||||||||||| || || | ||| || || ||||| | |||||| |||||||| ||||||    
T  24923568 attctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggc 24923667  T
Q  116 ttcgtaattccttgaatgttatcacgaagcacctt 150  Q
    || || || || || |||||||||||||| |||||    
T  24923668 ttggtgataccctggatgttatcacgaagaacctt 24923702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 24982120 - 24981926
Alignment:
Q  16 attctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggc 115  Q
    ||||||||| ||||||||||| || || |  || ||||| || |||||||| || || | ||| || || ||||| | |||||| |||||||| ||||||    
T  24982120 attctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggc 24982021  T
Q  116 ttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacat 210  Q
    || || || || || |||||||||||||| || || |  || |  ||||| ||||||||||| | |||||| || ||||||||||| || |||||    
T  24982020 ttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttccacgccctgacat 24981926  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 26358740 - 26358838
Alignment:
Q  100 acgacgaatcgcaggcttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttcc 198  Q
    |||||||||||| || || |||||||| ||||||||||| ||||| || || || || || ||||| || |||||||| || |||||||| ||||||||    
T  26358740 acgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcgatgacgctttgcaccaccctttcctaaaccctttcctccttttcc 26358838  T

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