View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20529_low_13 (Length: 341)

Name: NF20529_low_13
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20529_low_13
NF20529_low_13
[»] chr3 (14 HSPs)
chr3 (4-233)||(35644530-35644760)
chr3 (234-322)||(33219072-33219160)
chr3 (233-303)||(33214442-33214512)
chr3 (233-319)||(33214618-33214704)
chr3 (234-303)||(27073103-27073172)
chr3 (236-319)||(10598810-10598893)
chr3 (232-319)||(36274304-36274391)
chr3 (233-295)||(27072912-27072974)
chr3 (234-311)||(36635425-36635502)
chr3 (232-311)||(19580497-19580576)
chr3 (234-303)||(36274120-36274188)
chr3 (234-295)||(10599001-10599062)
chr3 (237-302)||(36635241-36635305)
chr3 (234-292)||(11651000-11651058)
[»] chr1 (23 HSPs)
chr1 (232-322)||(10227888-10227978)
chr1 (234-303)||(10227712-10227781)
chr1 (238-313)||(19059378-19059453)
chr1 (233-311)||(23346418-23346496)
chr1 (234-303)||(26552187-26552256)
chr1 (234-311)||(48871424-48871501)
chr1 (231-312)||(28217527-28217607)
chr1 (231-311)||(28217706-28217786)
chr1 (234-306)||(48752586-48752657)
chr1 (234-314)||(50893147-50893226)
chr1 (236-319)||(26551992-26552075)
chr1 (234-305)||(42180571-42180641)
chr1 (234-312)||(48871247-48871324)
chr1 (234-311)||(50892963-50893040)
chr1 (232-312)||(7062183-7062262)
chr1 (234-305)||(41834069-41834139)
chr1 (234-312)||(4156892-4156969)
chr1 (234-311)||(41833874-41833951)
chr1 (235-311)||(39669245-39669321)
chr1 (235-310)||(50905100-50905175)
chr1 (243-292)||(19059584-19059633)
chr1 (243-312)||(23346607-23346675)
chr1 (272-311)||(7062045-7062084)
[»] chr2 (22 HSPs)
chr2 (234-322)||(31860079-31860167)
chr2 (232-300)||(31860283-31860351)
chr2 (234-322)||(42028754-42028842)
chr2 (232-295)||(13280038-13280101)
chr2 (232-303)||(36059282-36059353)
chr2 (226-300)||(7317833-7317907)
chr2 (234-303)||(42028578-42028647)
chr2 (232-311)||(15332849-15332928)
chr2 (232-322)||(7317633-7317723)
chr2 (234-295)||(13279840-13279901)
chr2 (234-322)||(16115220-16115308)
chr2 (234-313)||(2059490-2059569)
chr2 (235-314)||(3671822-3671900)
chr2 (233-303)||(2059679-2059749)
chr2 (234-303)||(16115046-16115115)
chr2 (234-311)||(31470587-31470663)
chr2 (234-303)||(38085967-38086035)
chr2 (234-314)||(31470762-31470841)
chr2 (234-291)||(15330449-15330505)
chr2 (234-311)||(38086154-38086231)
chr2 (234-311)||(3672010-3672087)
chr2 (233-264)||(36059247-36059278)
[»] scaffold0214 (2 HSPs)
scaffold0214 (234-322)||(11803-11891)
scaffold0214 (238-311)||(11630-11703)
[»] scaffold0135 (2 HSPs)
scaffold0135 (228-319)||(37440-37531)
scaffold0135 (253-295)||(37649-37691)
[»] chr4 (13 HSPs)
chr4 (228-319)||(9231574-9231665)
chr4 (232-322)||(3102538-3102628)
chr4 (235-322)||(13690216-13690303)
chr4 (234-312)||(3102726-3102804)
chr4 (234-303)||(40534158-40534227)
chr4 (232-319)||(40533961-40534048)
chr4 (231-305)||(5121000-5121074)
chr4 (233-303)||(11147013-11147083)
chr4 (232-311)||(18381496-18381575)
chr4 (228-311)||(18936670-18936752)
chr4 (232-311)||(37177813-37177892)
chr4 (233-311)||(18936864-18936942)
chr4 (253-295)||(9231783-9231825)
[»] chr5 (29 HSPs)
chr5 (232-303)||(26534693-26534764)
chr5 (233-322)||(130253-130342)
chr5 (234-303)||(791592-791661)
chr5 (234-319)||(26534506-26534591)
chr5 (234-322)||(42630711-42630799)
chr5 (234-303)||(130443-130512)
chr5 (234-319)||(8323707-8323792)
chr5 (236-303)||(8323903-8323970)
chr5 (234-311)||(33377835-33377912)
chr5 (234-314)||(35454451-35454530)
chr5 (232-311)||(5146690-5146769)
chr5 (232-311)||(35454637-35454715)
chr5 (234-291)||(791810-791867)
chr5 (234-295)||(6518203-6518264)
chr5 (234-306)||(14388512-14388583)
chr5 (232-311)||(8489121-8489200)
chr5 (232-303)||(42630902-42630973)
chr5 (232-302)||(14069859-14069928)
chr5 (229-311)||(19898941-19899023)
chr5 (234-311)||(13823335-13823412)
chr5 (237-314)||(19897228-19897304)
chr5 (234-314)||(5146504-5146583)
chr5 (232-292)||(6518409-6518468)
chr5 (234-311)||(40881792-40881867)
chr5 (234-311)||(228717-228794)
chr5 (231-302)||(13823147-13823217)
chr5 (281-322)||(791770-791811)
chr5 (237-295)||(228987-229044)
chr5 (251-311)||(40882006-40882066)
[»] chr6 (8 HSPs)
chr6 (233-319)||(33022163-33022249)
chr6 (235-303)||(33022363-33022431)
chr6 (235-312)||(7789856-7789933)
chr6 (232-312)||(21389208-21389287)
chr6 (234-311)||(21389021-21389098)
chr6 (245-312)||(7789678-7789744)
chr6 (235-314)||(29859734-29859813)
chr6 (235-311)||(28472548-28472624)
[»] scaffold0140 (1 HSPs)
scaffold0140 (221-312)||(15836-15925)
[»] chr8 (11 HSPs)
chr8 (234-312)||(2814430-2814508)
chr8 (234-319)||(37994708-37994793)
chr8 (234-303)||(37994903-37994972)
chr8 (232-319)||(44036812-44036899)
chr8 (229-311)||(14193512-14193593)
chr8 (230-311)||(397192-397273)
chr8 (232-303)||(41539966-41540036)
chr8 (233-303)||(41539769-41539839)
chr8 (232-312)||(2814241-2814320)
chr8 (234-302)||(397007-397074)
chr8 (232-311)||(14193322-14193400)
[»] chr7 (9 HSPs)
chr7 (232-302)||(7298833-7298902)
chr7 (234-311)||(7298635-7298712)
chr7 (234-311)||(40521203-40521280)
chr7 (232-312)||(40521014-40521093)
chr7 (228-319)||(19804791-19804882)
chr7 (232-303)||(19805609-19805680)
chr7 (234-314)||(28948990-28949069)
chr7 (234-312)||(16979604-16979681)
chr7 (237-306)||(46567960-46568028)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 35644530 - 35644760
Alignment:
Q  4 ctatatcttcttgtttgataa-tcaagttactggttcaattacaatttgaggtttgtgttcatgatgtttaccaagtagacctatttgtgctacaactca 102  Q
    |||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35644530 ctatatctccttgtttggtaaatcaagttactggttcaattacaatttgaggttcgtgttcatgatgtttaccaagtagacctatttgtgctacaactca 35644629  T
Q  103 aggtctcgtttatttgacatatctaattgttgctctaatataacttatccaatatttacttcaaacccatacattttcaaatacgttaaccttgttattt 202  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||| |||||||    
T  35644630 atgtctcgtttatttgacatatctaattgttgctctaatataacttattcaatatttacttcaaacccatgcatttttaaatacgataacctcgttattt 35644729  T
Q  203 ccaaaaaattgaaccaatcataaaaaattaa 233  Q
    |||||||||||||||||||||||||||||||    
T  35644730 ccaaaaaattgaaccaatcataaaaaattaa 35644760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 33219072 - 33219160
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |  ||||||| |||||| ||||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttttccaccataaa 33219160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 33214442 - 33214512
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  33214442 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 33214512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 33214704 - 33214618
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| || |||||| |||||    
T  33214704 agagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 33214618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 27073172 - 27073103
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 27073103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 10598810 - 10598893
Alignment:
Q  236 gaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| || |||||| |||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 10598893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 36274391 - 36274304
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||| || |||||| |||||    
T  36274391 aagagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 36274304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 27072912 - 27072974
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacat 295  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  27072912 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 36635502 - 36635425
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||| |||||||||| ||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 36635425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 19580576 - 19580497
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||| ||| |||||| ||||    
T  19580576 aagagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgtttt 19580497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 36274120 - 36274188
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    |||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  36274120 gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 36274188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 10599062 - 10599001
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacat 295  Q
    ||||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacat 10599001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 36635241 - 36635305
Alignment:
Q  237 aaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgt 302  Q
    |||||||||||||||||||||||||| ||| |||  ||||||||||||||||||||||| ||||||    
T  36635241 aaattcttgtgtaggaacgaacctaa-ctatcattgttacaaacaacaaattaaaacatgacacgt 36635305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 11651000 - 11651058
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaa 292  Q
    ||||||||||||| || ||||||||||||| || ||| |||||||||||||| ||||||    
T  11651000 gagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaa 11651058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 10227978 - 10227888
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| ||||||||    
T  10227978 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacatcattatttttccaccataaa 10227888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 10227712 - 10227781
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10227712 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtc 10227781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 19059378 - 19059453
Alignment:
Q  238 aattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttc 313  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttc 19059453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 23346418 - 23346496
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||||||||||||||||||||||| || ||| ||||||||||| |||||||||||| |||||||||| ||||    
T  23346418 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattttttt 23346496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 26552256 - 26552187
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || |||||||    
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 26552187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 48871501 - 48871424
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||  ||||||||| ||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgtttt 48871424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 28217527 - 28217607
Alignment:
Q  231 taagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    |||||||||||| |||||||||||||||||||  || ||| |||||||||||||||||||||||| |||||||||| |||||    
T  28217527 taagagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 28217607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 28217786 - 28217706
Alignment:
Q  231 taagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||| ||||||||||||||||||||| || ||| |||||||||||||||| ||||||| |||| ||||| ||||    
T  28217786 taagagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgtttt 28217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 48752657 - 48752586
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcatt 306  Q
    |||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||| ||||||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 48752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 50893226 - 50893147
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttct 314  Q
    |||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||| |||| ||||| |||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacacatcattttttttct 50893147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 26551992 - 26552075
Alignment:
Q  236 gaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||  |||||| || |||||| |||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttttccaccat 26552075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 42180571 - 42180641
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcat 305  Q
    ||||||||||||||||||||||||||||| ||| |||  ||||||||||||||||||||||| |||||||||    
T  42180571 gagaaattcttgtgtaggaacgaacctaa-ctagcattattacaaacaacaaattaaaacatgacacgtcat 42180641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 48871247 - 48871324
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaataacaaattaaaacatgacacatcatttttttt 48871324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 50892963 - 50893040
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||| |||||||| ||||||| |||| || ||| |||||||||||||||||||||||| |||||||||| ||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 50893040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 7062262 - 7062183
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    |||||||||| ||||||||||||||||||||| || |||  |||||||||||||||||||| || |||||||||| |||||    
T  7062262 aagagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtcatttttttt 7062183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 41834139 - 41834069
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcat 305  Q
    ||||||||||||||||||||||||| |||| || |||  ||||||||||||||||||||||| |||||||||    
T  41834139 gagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtcat 41834069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 4156892 - 4156969
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    |||||||||||||||||||| |||||||| ||| ||| |||||||| || |||||||||||| |||||||||| |||||    
T  4156892 gagaaattcttgtgtaggaaggaacctaa-ctatcattcttacaaataataaattaaaacatgacacgtcatttttttt 4156969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 41833874 - 41833951
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||||| ||| |||||| ||||  || ||| |||||| ||||||||||||||||| |||||||||||||||    
T  41833874 gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattatttt 41833951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 39669321 - 39669245
Alignment:
Q  235 agaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||| ||||||| |||| || ||| |||||||| ||||||||||||||| |||||| ||| ||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgtttt 39669245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 50905175 - 50905100
Alignment:
Q  235 agaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattt 310  Q
    ||||||| |||||||  |||||| ||||| || ||| |||||||||||||||||||||||| | ||||||||||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattattt 50905100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 19059633 - 19059584
Alignment:
Q  243 ttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaa 292  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaa 19059584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 23346675 - 23346607
Alignment:
Q  243 ttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    ||||||||||||||||||||| || ||| ||||||||||| |||||||||||| ||| |||||| |||||    
T  23346675 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacatgtcatttttttt 23346607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 7062045 - 7062084
Alignment:
Q  272 cttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  7062045 cttacaaacaacaaattaaaacatgacacgtcattgtttt 7062084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 31860079 - 31860167
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtcattatttttccaccataaa 31860167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 31860351 - 31860283
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31860351 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacac 31860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 42028842 - 42028754
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| || |||||| ||||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaa 42028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 13280101 - 13280038
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacat 295  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13280101 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacat 13280038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 36059353 - 36059282
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  36059353 aagagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 36059282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 7317907 - 7317833
Alignment:
Q  226 aaaattaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacac 300  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  7317907 aaaaataagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacac 7317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 42028578 - 42028647
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  42028578 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtc 42028647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 15332928 - 15332849
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||||||||||||||||||| || ||| ||||||||||| |||||||||||| |||||||||| ||||    
T  15332928 aagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 15332849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 322
Target Start/End: Original strand, 7317633 - 7317723
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||| || |||||| ||||||||    
T  7317633 aagagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttttccaccataaa 7317723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 13279840 - 13279901
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacat 295  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 16115308 - 16115220
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||| || |||| ||||| |||||| ||||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttttccaccataaa 16115220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 2059490 - 2059569
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttc 313  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| || |||| ||||| ||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttttc 2059569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 3671822 - 3671900
Alignment:
Q  235 agaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttct 314  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||| ||||| |||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacatcattttttttct 3671900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 2059749 - 2059679
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||||    
T  2059749 agagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 2059679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 16115046 - 16115115
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| || |||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 16115115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 31470587 - 31470663
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||| |||||||||| ||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 31470663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 38085967 - 38086035
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||| |||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 38086035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 31470841 - 31470762
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttct 314  Q
    |||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||  || |||| ||||| |||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaataatgacacatcattttttttct 31470762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaa 291  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 38086231 - 38086154
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||| ||||||||| || |||||||| || ||| ||||||||||||||||||||| || | |||||||| ||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgtttt 38086154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 3672087 - 3672010
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||| || ||||||||| ||||  || |||  ||||||| |||||||||||| ||||||||||||| ||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgtttt 3672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 264
Target Start/End: Original strand, 36059247 - 36059278
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacc 264  Q
    ||||||||||||||||||||||||||||||||    
T  36059247 agagaaattcttgtgtaggaacgaacctaacc 36059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 11891 - 11803
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||| ||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaa 11803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 11630 - 11703
Alignment:
Q  238 aattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||| ||||    
T  11630 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgtttt 11703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 37440 - 37531
Alignment:
Q  228 aattaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||| |||||    
T  37440 aattatgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 37531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 37691 - 37649
Alignment:
Q  253 acgaacctaacctaccatccttacaaacaacaaattaaaacat 295  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacat 37649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 9231574 - 9231665
Alignment:
Q  228 aattaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||| |||||    
T  9231574 aattatgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 9231665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 322
Target Start/End: Original strand, 3102538 - 3102628
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| || |||||| ||||||||    
T  3102538 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaa 3102628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 13690216 - 13690303
Alignment:
Q  235 agaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| || |||||| ||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccataaa 13690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 3102804 - 3102726
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||    
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttt 3102726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 40534227 - 40534158
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 40534158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 40533961 - 40534048
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||| || |||||| |||||    
T  40533961 aagagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccat 40534048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 5121074 - 5121000
Alignment:
Q  231 taagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcat 305  Q
    |||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||| |||| ||||    
T  5121074 taagagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcat 5121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 11147013 - 11147083
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||||||  || ||| |||||||||||||||||||||||| |||||||    
T  11147013 agagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 11147083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 18381575 - 18381496
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||||||||||||||||||| |  ||| ||||||| |||||||||||||||| |||| ||||| ||||    
T  18381575 aagagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgtttt 18381496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 18936670 - 18936752
Alignment:
Q  228 aattaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||||||| | |||||||| ||||    
T  18936670 aattaagagaaattcttgtgtatgaacgaacataa-ctatcattcttacaaacaacaaattaaaacatgatacgtcattttttt 18936752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 37177892 - 37177813
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||||||| ||||||||||| |||| || ||| |||||||||||||||||||||||| | |||||||| ||||    
T  37177892 aagagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 37177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 18936942 - 18936864
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||| |||||||||||||||  || ||| ||||||||||| |||||||||||| |||||||||| ||||    
T  18936942 agagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 18936864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 9231825 - 9231783
Alignment:
Q  253 acgaacctaacctaccatccttacaaacaacaaattaaaacat 295  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacat 9231783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 26534764 - 26534693
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26534764 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtc 26534693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 130253 - 130342
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| ||||||| || |||||| ||||||||    
T  130253 agagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccataaa 130342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 791592 - 791661
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtc 791661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 26534506 - 26534591
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| || |||||| |||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 26534591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 42630711 - 42630799
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||| |||||| ||||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttttccaccataaa 42630799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 130512 - 130443
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtc 130443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 8323707 - 8323792
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| ||||||| || |||||| |||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttttccaccat 8323792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 8323970 - 8323903
Alignment:
Q  236 gaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 8323903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 33377912 - 33377835
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||| ||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 33377835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 35454451 - 35454530
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttct 314  Q
    |||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||| |||||||||| |||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattttttttct 35454530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 5146769 - 5146690
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||||||||||| |||||||||||  || ||| |||||||||||||||||||||||| |||||||||| ||||    
T  5146769 aagagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 5146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 35454715 - 35454637
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||| ||||    
T  35454715 aagaaaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 35454637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 791867 - 791810
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaa 291  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 6518203 - 6518264
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacat 295  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 6518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 14388583 - 14388512
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcatt 306  Q
    ||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||| ||||||||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 14388512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 8489121 - 8489200
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||||||||||||||| || ||||| || ||| ||||||||||||||||||||| || |||||||||| ||||    
T  8489121 aagagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgtttt 8489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 42630973 - 42630902
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| || |||||||    
T  42630973 aagaaaaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtc 42630902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 14069859 - 14069928
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgt 302  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||| ||||||    
T  14069859 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 19899023 - 19898941
Alignment:
Q  229 attaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||| |||||||||||||||||||||||||||||| || |||  ||| ||||||||||||||||||| ||| |||||| ||||    
T  19899023 attatgagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgtttt 19898941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 13823412 - 13823335
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||||||||||||||||| |||| || |||  ||||||| ||||||||||||||| |||||||||| ||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgtttt 13823335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 19897228 - 19897304
Alignment:
Q  237 aaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttct 314  Q
    ||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||  |||||||    
T  19897228 aaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatattttttct 19897304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 5146504 - 5146583
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttct 314  Q
    |||||||| ||||||||||||||||||||| || ||| ||||||||||| |||||||||||| |||||| ||| |||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgttattttttttct 5146583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 6518468 - 6518409
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaa 292  Q
    ||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||    
T  6518468 aagagaaattcttgtgtagtaacgaacctaa-ctatcattcttacaaacaacaaattaaaa 6518409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 40881792 - 40881867
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||| ||||||||||||||||||||| |   || ||||||||||| |||||||||||| |||||||||| ||||    
T  40881792 gagaaattgttgtgtaggaacgaacctaacatt--attcttacaaacaataaattaaaacatgacacgtcattgtttt 40881867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 228717 - 228794
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||  |||||||||||||||||||| || ||| |||| |||||| |||||||||||| |||||| ||| ||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgtttt 228794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 13823147 - 13823217
Alignment:
Q  231 taagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgt 302  Q
    |||||||||||||||||||||||||||||||| ||| ||| | || |||||| ||| |||||||| ||||||    
T  13823147 taagagaaattcttgtgtaggaacgaacctaa-ctatcattcgtataaacaataaactaaaacatgacacgt 13823217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 791811 - 791770
Alignment:
Q  281 aacaaattaaaacataacacgtcattatttttctaccataaa 322  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  791811 aacaaattaaaacatgacacgtcattatttttccaccataaa 791770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 229044 - 228987
Alignment:
Q  237 aaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacat 295  Q
    ||||| |||||||| ||||||| |||| || ||| ||||||||||||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaacat 228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 40882066 - 40882006
Alignment:
Q  251 gaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||| ||||| || ||| ||||||||||||||||||||| || |||||| ||| ||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgtttt 40882006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 33022163 - 33022249
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||| |||||    
T  33022163 agagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccat 33022249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 33022431 - 33022363
Alignment:
Q  235 agaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtc 33022363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 7789933 - 7789856
Alignment:
Q  235 agaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    ||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||| |||||||||| |||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 7789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 21389287 - 21389208
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    |||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||| |||||    
T  21389287 aagataaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 21389208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 21389021 - 21389098
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||||| | |||||||| ||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 21389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 7789678 - 7789744
Alignment:
Q  245 gtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||| ||| |||||| |||||    
T  7789678 gtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttttt 7789744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 29859813 - 29859734
Alignment:
Q  235 agaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttct 314  Q
    ||||||| || |||||||||||||||||  || |||  ||| ||||||||||||||| |||||||||| ||| |||||||    
T  29859813 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttattttttttct 29859734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 28472624 - 28472548
Alignment:
Q  235 agaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||| || |||||||||||||||||  || |||  ||| ||||||||||||||| |||||||||| ||| ||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttattttttt 28472548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 15836 - 15925
Alignment:
Q  221 cataaaaaattaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    ||||||||||  ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||| |||||||||    
T  15836 cataaaaaat--agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgttattattttt 15925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 2814508 - 2814430
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||| |||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 2814430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 37994708 - 37994793
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | ||||| || |||||| |||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttttccaccat 37994793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 37994972 - 37994903
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtc 37994903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 44036812 - 44036899
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||| || |||||| |||||    
T  44036812 aagagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttttccaccat 44036899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 14193593 - 14193512
Alignment:
Q  229 attaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||| |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||| ||||    
T  14193593 attatgagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattttttt 14193512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 397273 - 397192
Alignment:
Q  230 ttaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    ||||||||||||||||||||| |||||||||||| || ||| |||| ||||||||||||||||||| |||||||||| ||||    
T  397273 ttaagagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgtttt 397192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 41540036 - 41539966
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||||    
T  41540036 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacacgtc 41539966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 41539769 - 41539839
Alignment:
Q  233 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| || |||||||    
T  41539769 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtc 41539839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 2814241 - 2814320
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||| ||||||| || |||||    
T  2814241 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaatcatgacacgtcgtttttttt 2814320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 397007 - 397074
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgt 302  Q
    |||||||||||||| ||||||||||||||| || ||| ||||||||||| |||||||||||||||||||    
T  397007 gagaaattcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacacgt 397074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 14193322 - 14193400
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||| |||| |||||||||||||||| ||  ||  ||||||||||||||||||||||| |||| ||||| ||||    
T  14193322 aagagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgtttt 14193400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 7298902 - 7298833
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgt 302  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  7298902 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacataacacgt 7298833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 7298635 - 7298712
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||| |||||||||| ||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 7298712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 40521280 - 40521203
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttt 311  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||| ||||| ||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgtttt 40521203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 40521014 - 40521093
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| || ||||||||| ||||||    
T  40521014 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaatatgacacgtcataattttt 40521093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 19804791 - 19804882
Alignment:
Q  228 aattaagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttctaccat 319  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||  |||| || || |||||| |||||    
T  19804791 aattatgagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttttccaccat 19804882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 19805680 - 19805609
Alignment:
Q  232 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtc 303  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |||||||    
T  19805680 aagagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtc 19805609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 28949069 - 28948990
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattatttttct 314  Q
    |||||||| ||||||||||||||||||||| || ||| ||||||||||| |||||||||||| |||||||||| |||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtcattttttttct 28948990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 16979681 - 16979604
Alignment:
Q  234 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcattattttt 312  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||| ||||||||||||||| |||||||||| |||||    
T  16979681 gagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtcatttttttt 16979604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 46567960 - 46568028
Alignment:
Q  237 aaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacataacacgtcatt 306  Q
    |||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||    
T  46567960 aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatt 46568028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University