View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20529_low_15 (Length: 330)

Name: NF20529_low_15
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20529_low_15
NF20529_low_15
[»] chr1 (3 HSPs)
chr1 (18-315)||(25809214-25809511)
chr1 (22-73)||(25797605-25797656)
chr1 (209-253)||(25809361-25809405)
[»] chr4 (5 HSPs)
chr4 (134-242)||(50134993-50135102)
chr4 (141-189)||(48514590-48514637)
chr4 (150-184)||(6924754-6924788)
chr4 (151-188)||(41594681-41594718)
chr4 (140-189)||(54235277-54235325)
[»] chr6 (1 HSPs)
chr6 (131-199)||(9065723-9065791)
[»] chr2 (2 HSPs)
chr2 (140-189)||(10459273-10459321)
chr2 (135-180)||(39713794-39713839)
[»] chr8 (1 HSPs)
chr8 (124-152)||(10107275-10107303)
[»] chr3 (1 HSPs)
chr3 (156-184)||(30443760-30443788)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 25809511 - 25809214
Alignment:
Q  18 catacgcccccatgcaactggaccaaggctttttctcatcatcctagacactgtaagctctctattttctaactcttgatcgtttatttggtataataat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||||    
T  25809511 catacgcccccatgcaactggaccaaggctttttctcatcatcctagacactgtaagctctctattttctaactcttgatcatttcttcgatataataat 25809412  T
Q  118 gcaacatacttcctctggtctcaaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaagttgaattaagta-atctatttttgtcg 216  Q
    || |||||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |    
T  25809411 gcgacatactctctccagtctcaaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaagttgaattaaatacatctatttttgttg 25809312  T
Q  217 actcaacttttgtttatgtttgagaccggagagagtagtaagcat-aaattagtgctcatctgcacgctagtattagcataatttagttatggtttttct 315  Q
    ||| || |||||||||| ||| ||||||  |||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25809311 acttaatttttgtttatatttaagaccg--gagagtagtaagtatctaattagtgctcatctgtacgctagtattagcataatttagttatggtttttct 25809214  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 25797656 - 25797605
Alignment:
Q  22 cgcccccatgcaactggaccaaggctttttctcatcatcctagacactgtaa 73  Q
    ||||| |||||| |||||||||||||||| |||||||| |||||||| ||||    
T  25797656 cgccctcatgcacctggaccaaggcttttcctcatcattctagacacagtaa 25797605  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 25809361 - 25809405
Alignment:
Q  209 ttttgtcgactcaacttttgtttatgtttgagaccggagagagta 253  Q
    |||||| ||| |||||||||||||| |||||||| ||||||||||    
T  25809361 ttttgttgacccaacttttgtttatatttgagactggagagagta 25809405  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 50134993 - 50135102
Alignment:
Q  134 ggtctcaaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaagttgaattaagta-atctatttttgtcgactcaacttttgttta 232  Q
    |||||||||||||| ||||| |||  ||||| |||||| |||||||| |||||||||||||| ||| || ||  |||||||| ||||| |||||||||||    
T  50134993 ggtctcaaatataagcaaaaattgaatcaaccaaagtttatgtatttagtccaaaagttgaaataaatacattcatttttgttgactcgacttttgttta 50135092  T
Q  233 tgtttgagac 242  Q
    | || |||||    
T  50135093 tattcgagac 50135102  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 48514637 - 48514590
Alignment:
Q  141 aatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaa 189  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||||    
T  48514637 aatataaacaaaaattag-tcaacaaaagttaatgtatttggtccaaaa 48514590  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 6924788 - 6924754
Alignment:
Q  150 aaaagttgggtcaacaaaagttaatgtatttggtc 184  Q
    ||||||| |||||||||||||||||||||||||||    
T  6924788 aaaagttaggtcaacaaaagttaatgtatttggtc 6924754  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 41594681 - 41594718
Alignment:
Q  151 aaagttgggtcaacaaaagttaatgtatttggtccaaa 188  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  41594681 aaagttgggtcaacaaaagttgatgtatatggtccaaa 41594718  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 54235325 - 54235277
Alignment:
Q  140 aaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaa 189  Q
    |||||||||||||| |||  |||||||||||||||||||||||| |||||    
T  54235325 aaatataaacaaaaattgc-tcaacaaaagttaatgtatttggttcaaaa 54235277  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 9065723 - 9065791
Alignment:
Q  131 tctggtctcaaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaagttgaattaa 199  Q
    ||||||||||||||||||||||||||  |||||||||| || |||||||| ||| |||| || ||||||    
T  9065723 tctggtctcaaatataaacaaaagttaagtcaacaaaaattgatgtatttcgtctaaaatttaaattaa 9065791  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 10459273 - 10459321
Alignment:
Q  140 aaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaa 189  Q
    |||||||| ||||| |||| |||||||||||||||||||||||| |||||    
T  10459273 aaatataagcaaaaattgg-tcaacaaaagttaatgtatttggttcaaaa 10459321  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 39713839 - 39713794
Alignment:
Q  135 gtctcaaatataaacaaaagttgggtcaacaaaagttaatgtattt 180  Q
    ||||||||||||| ||||||||| ||||||||||| | ||||||||    
T  39713839 gtctcaaatataagcaaaagttgagtcaacaaaaggtgatgtattt 39713794  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 10107275 - 10107303
Alignment:
Q  124 tacttcctctggtctcaaatataaacaaa 152  Q
    |||||||||||||||||||||||||||||    
T  10107275 tacttcctctggtctcaaatataaacaaa 10107303  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 30443760 - 30443788
Alignment:
Q  156 tgggtcaacaaaagttaatgtatttggtc 184  Q
    |||||||||||||||||||||||||||||    
T  30443760 tgggtcaacaaaagttaatgtatttggtc 30443788  T

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