View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20529_low_19 (Length: 237)

Name: NF20529_low_19
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20529_low_19
NF20529_low_19
[»] chr7 (11 HSPs)
chr7 (1-230)||(24288845-24289074)
chr7 (121-198)||(24844608-24844685)
chr7 (121-184)||(24934839-24934902)
chr7 (142-228)||(25621702-25621788)
chr7 (121-230)||(27067818-27067926)
chr7 (121-230)||(27210387-27210495)
chr7 (129-230)||(32793214-32793315)
chr7 (140-227)||(8879525-8879612)
chr7 (121-230)||(13578300-13578408)
chr7 (123-227)||(2677768-2677872)
chr7 (167-230)||(33060891-33060954)
[»] chr2 (13 HSPs)
chr2 (121-230)||(15441950-15442059)
chr2 (137-227)||(37607153-37607243)
chr2 (140-219)||(26586285-26586364)
chr2 (140-230)||(18675138-18675228)
chr2 (123-227)||(38853792-38853896)
chr2 (121-230)||(14887477-14887586)
chr2 (119-230)||(34582649-34582760)
chr2 (156-230)||(26585148-26585222)
chr2 (119-230)||(31091506-31091617)
chr2 (140-230)||(17466807-17466897)
chr2 (138-179)||(18676926-18676967)
chr2 (123-227)||(7412129-7412233)
chr2 (129-193)||(11985734-11985798)
[»] chr8 (12 HSPs)
chr8 (140-230)||(28524812-28524902)
chr8 (119-230)||(31074027-31074138)
chr8 (125-230)||(28619028-28619133)
chr8 (121-193)||(24198969-24199041)
chr8 (123-225)||(9625227-9625329)
chr8 (123-230)||(5965421-5965528)
chr8 (142-228)||(28006576-28006662)
chr8 (142-228)||(28063879-28063965)
chr8 (140-218)||(28619536-28619614)
chr8 (140-206)||(2552068-2552134)
chr8 (127-193)||(12637774-12637840)
chr8 (125-206)||(8569447-8569528)
[»] chr3 (6 HSPs)
chr3 (124-230)||(29188369-29188475)
chr3 (123-227)||(39497244-39497348)
chr3 (121-230)||(36827454-36827563)
chr3 (140-220)||(47118040-47118120)
chr3 (123-223)||(19114570-19114670)
chr3 (122-230)||(53959079-53959187)
[»] chr4 (9 HSPs)
chr4 (140-230)||(21621877-21621967)
chr4 (121-230)||(4703196-4703305)
chr4 (142-227)||(32244670-32244755)
chr4 (142-230)||(21623096-21623184)
chr4 (140-230)||(2786275-2786367)
chr4 (167-230)||(24753540-24753603)
chr4 (146-230)||(25810392-25810476)
chr4 (173-230)||(39869007-39869064)
chr4 (144-192)||(32244332-32244380)
[»] chr1 (15 HSPs)
chr1 (123-228)||(8975196-8975301)
chr1 (123-218)||(44719387-44719482)
chr1 (142-227)||(50107185-50107270)
chr1 (123-206)||(26519105-26519188)
chr1 (121-220)||(5782449-5782548)
chr1 (121-227)||(11060766-11060872)
chr1 (121-230)||(32665749-32665858)
chr1 (123-176)||(39977369-39977422)
chr1 (167-220)||(44720838-44720891)
chr1 (134-230)||(6612467-6612563)
chr1 (123-179)||(18897920-18897976)
chr1 (183-230)||(1407737-1407784)
chr1 (123-230)||(29765960-29766067)
chr1 (167-230)||(33342497-33342560)
chr1 (137-230)||(39725390-39725483)
[»] chr5 (4 HSPs)
chr5 (121-230)||(9537058-9537166)
chr5 (121-220)||(16611763-16611862)
chr5 (131-227)||(30970567-30970663)
chr5 (140-230)||(9538028-9538118)
[»] chr6 (4 HSPs)
chr6 (127-226)||(24621345-24621444)
chr6 (123-202)||(12676477-12676556)
chr6 (121-226)||(29845516-29845620)
chr6 (125-225)||(29350193-29350292)
[»] scaffold0767 (1 HSPs)
scaffold0767 (134-229)||(5647-5742)
[»] scaffold0237 (1 HSPs)
scaffold0237 (121-226)||(1721-1825)
[»] scaffold0016 (1 HSPs)
scaffold0016 (123-172)||(36560-36609)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24289074 - 24288845
Alignment:
Q  1 tgaacatatctcagaagaattcataataaaaccaaagaacttgtcagaaaatgtttgcataatttcatacaaaaaatgaaggtgtaattgatatcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24289074 tgaacatatctcagaagaattcataataaaaccaaagaacttgtcagaaaatgtttgcataatttcatacaaaaaatgaaggtgtaattgatatcattaa 24288975  T
Q  101 attcttgagtaaatcgttttgctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  24288974 attcttgagtaaatcgttttgctgtcacaaagatctctaactcaggattaattacaaagtagtccttgaatgtgcacttccattatcactttattctctg 24288875  T
Q  201 gcgttatataattttgttaactgatgatgt 230  Q
    ||||||||||||| ||||||||||||||||    
T  24288874 gcgttatataattctgttaactgatgatgt 24288845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 24844608 - 24844685
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctc 198  Q
    |||||||| ||| ||  |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||    
T  24844608 gctgtcaccaaggtccataactcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtctc 24844685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 24934839 - 24934902
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcatt 184  Q
    |||||||||||| ||||| ||| |||||||| |||||| |||||||||||||||||||||||||    
T  24934839 gctgtcacaaaggtctctgacttaggattaaatacaaaatagtcattgaatgtgcactttcatt 24934902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 25621788 - 25621702
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgat 228  Q
    |||||||||| |||||| ||||  ||||||||||||||   ||||||||||| || ||| ||||| |||||||||||||||||||||    
T  25621788 tcaggattaaatacaaattagtttttgaatgtgcacttctgttatcactttagtcactgacgttaaataattttgttaactgatgat 25621702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 27067818 - 27067926
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||| |||||||||| |||| |||||||   ||||||||||  ||||||||||||||||||||||||||| |||||| | ||| |||||| || |||    
T  27067818 gctgtcataaagatctctgactc-ggattaaaagcaaagtagtccctgaatgtgcactttcattatcactttagtctctgacattaaataattatgctaa 27067916  T
Q  221 ctgatgatgt 230  Q
    | | ||||||    
T  27067917 cgggtgatgt 27067926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 27210495 - 27210387
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||| |||||||||| |||| |||||||   ||||||||||  ||||||||||||||||||||||||||| |||||| | ||| |||||| || |||    
T  27210495 gctgtcataaagatctctgactc-ggattaaaagcaaagtagtccctgaatgtgcactttcattatcactttagtctctgacattaaataattatgctaa 27210397  T
Q  221 ctgatgatgt 230  Q
    | | ||||||    
T  27210396 cgggtgatgt 27210387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 32793214 - 32793315
Alignment:
Q  129 aaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgat 228  Q
    |||| ||||||||| |||||||| ||||||  ||||||||| | |||| ||   ||||||||||| ||| |||||||| |||||| ||||||||||||||    
T  32793214 aaaggtctctaacttaggattaaatacaaataagtcattgattctgcatttcggttatcactttagtctttggcgttaaataattatgttaactgatgat 32793313  T
Q  229 gt 230  Q
    ||    
T  32793314 gt 32793315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 8879612 - 8879525
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    |||||||||||| |||||||||||   |||||||||| ||   ||||||||||| || ||| ||||| ||||||||||||||| ||||    
T  8879612 actcaggattaaatacaaagtagttcctgaatgtgcatttctgttatcactttagtccctgacgttaaataattttgttaactaatga 8879525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 13578408 - 13578300
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||| ||||||| || |||||| ||||| ||||||  ||||| ||| | ||||||| | ||||||||||| || ||| ||||| |||||| ||||||    
T  13578408 gctgtcataaagatcactgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttagtc-ctgacgttaaataattatgttaa 13578310  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  13578309 gtgatgatgt 13578300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 2677872 - 2677768
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||| ||| | ||||| |||||| ||||||||| ||  | ||||||||||||| |||||| |||| || || |||||| | | ||| |||||||    
T  2677872 tgtcacaaaggtctatgactcatgattaaatacaaagtattccctaaatgtgcactttcgttatcagtttagtccctcgcgttaaaaactttagttaact 2677773  T
Q  223 gatga 227  Q
    |||||    
T  2677772 gatga 2677768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 33060891 - 33060954
Alignment:
Q  167 tgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||| ||||| | ||||||||||| |||||| ||||| |||||| |||||| |||||||||    
T  33060891 tgaatgtacacttccgttatcactttagtctctgacgttaaataattctgttaaatgatgatgt 33060954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 15442059 - 15441950
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||||||||  || |||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||| | |||| |||||||||||||    
T  15442059 gctgtcacaaagattcctgactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctctagtgttaaataattttgttaa 15441960  T
Q  221 ctgatgatgt 230  Q
    ||||||||||    
T  15441959 ctgatgatgt 15441950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 37607153 - 37607243
Alignment:
Q  137 ctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    |||||||| |||||| ||||| |||||| || ||||||||||| | ||||||||||| || ||| |||||||||||| |||||||||||||    
T  37607153 ctaactcatgattaaatacaaggtagtcctttaatgtgcacttccgttatcactttagtccctgacgttatataattatgttaactgatga 37607243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 26586364 - 26586285
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtta 219  Q
    ||||| |||||| || ||||||||| |||||||||||||| | ||||||||||| |||||||||||| |||||| |||||    
T  26586364 actcaagattaaatataaagtagtctttgaatgtgcacttccgttatcactttagtctctggcgttaaataattatgtta 26586285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 18675138 - 18675228
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||| ||||| || ||| ||||| ||| |||||||||| ||||||||||||| ||| |||||| | |||||||||||||||||| ||||    
T  18675138 actcagaattaaatataaaatagtccttggatgtgcacttccattatcactttagtctttggcgtcaaataattttgttaactgataatgt 18675228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 38853792 - 38853896
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    ||||| |||| ||||| |||||||||||| ||||||||||||  | ||||||||||| | |||||| |||| || ||| ||||| |||||| ||||||||    
T  38853792 tgtcataaaggtctctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgttaaataattatgttaact 38853891  T
Q  223 gatga 227  Q
     ||||    
T  38853892 catga 38853896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 14887586 - 14887477
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||| ||| || || ||||||||||||  | ||||||  |  |||||||||| || |||  |||||||| ||||| |||||| |||||||||||||    
T  14887586 gctgtcacgaaggtccctgactcaggattaaacataaagtataccctgaatgtgcaattccatcgtcactttaatctctagcgttaaataattttgttaa 14887487  T
Q  221 ctgatgatgt 230  Q
    ||||||||||    
T  14887486 ctgatgatgt 14887477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 34582760 - 34582649
Alignment:
Q  119 ttgctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    ||||||| |||||| ||  | |||| ||||||| ||||||||||||  ||||||||||||| | ||||||||||| || ||| ||||| |||||| | |     
T  34582760 ttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagtccctgacgttaaataattatatc 34582661  T
Q  219 aactgatgatgt 230  Q
    ||||||| ||||    
T  34582660 aactgatcatgt 34582649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 26585148 - 26585222
Alignment:
Q  156 aaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||||||||| |||| |||||   ||||||||||| ||||| |||||| |||||| |||||| |||||||||    
T  26585148 aaagtagtcattggatgtacacttctgttatcactttagtctctagcgttaaataattatgttaattgatgatgt 26585222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 31091617 - 31091506
Alignment:
Q  119 ttgctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    ||||||||||| || || || |||||||||||| ||||||  ||||  ||| | ||||||| | ||||||||||| |||||| ||||| | || | ||||    
T  31091617 ttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtctctgacgttaaaaaaatatgtt 31091518  T
Q  219 aactgatgatgt 230  Q
    || |||||||||    
T  31091517 aagtgatgatgt 31091506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 17466897 - 17466807
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| ||||||| ||||  ||| | ||||||| | ||||||||||| |||  | ||||| |||||| |||||| |||||||||    
T  17466897 actcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtctaagacgttaaataattctgttaagtgatgatgt 17466807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 18676967 - 18676926
Alignment:
Q  138 taactcaggattaattacaaagtagtcattgaatgtgcactt 179  Q
    ||||| |||||||| |||||| ||||||||||||||||||||    
T  18676967 taactaaggattaaatacaaaatagtcattgaatgtgcactt 18676926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 7412129 - 7412233
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    ||||||| |||||||| ||||| |||||| || |||| ||||| |||  |||||||| | ||||||||||| || ||  | ||| |||||| |||||| |    
T  7412129 tgtcacatagatctctgactcaagattaaatataaagaagtcactgatagtgcacttccgttatcactttagtccctaacattaaataattatgttaagt 7412228  T
Q  223 gatga 227  Q
    |||||    
T  7412229 gatga 7412233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 11985734 - 11985798
Alignment:
Q  129 aaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcacttta 193  Q
    |||| ||||| |||||||||||| ||||||||||||  |||| ||||| |||| |||||| ||||    
T  11985734 aaaggtctctgactcaggattaaatacaaagtagtctctgaaggtgcattttcgttatcagttta 11985798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 28524812 - 28524902
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| ||||||||| || |||||||||||||| | |||||| |||| |||||| ||||| |||||||||||||||||||||||    
T  28524812 actcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgt 28524902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 31074027 - 31074138
Alignment:
Q  119 ttgctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    |||||||||||||  ||||| |||| ||||||| | |||||||||   |||||||||||||   ||||||||||| |||||||  ||| |||||||||||    
T  31074027 ttgctgtcacaaaagtctctgactctggattaaatgcaaagtagtttctgaatgtgcacttctgttatcactttagtctctggaattaaataattttgtt 31074126  T
Q  219 aactgatgatgt 230  Q
    ||||||||||||    
T  31074127 aactgatgatgt 31074138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 28619028 - 28619133
Alignment:
Q  125 tcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactga 224  Q
    |||||||| || || || || |||||| ||||||| | ||||||| | ||||||||| ||||||||||| |||| | ||||| ||||||||||||| |||    
T  28619028 tcacaaaggtccctgacccatgattaaatacaaagaaatcattgactctgcactttcgttatcactttagtctcggccgttaaataattttgttaagtga 28619127  T
Q  225 tgatgt 230  Q
    ||||||    
T  28619128 tgatgt 28619133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 24198969 - 24199041
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcacttta 193  Q
    |||||||||||| ||| | | |||||||||| ||||||||| ||||||||||||||||| | |||||||||||    
T  24198969 gctgtcacaaaggtctttgattcaggattaaatacaaagtaatcattgaatgtgcacttccgttatcacttta 24199041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 9625227 - 9625329
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    ||||||||||| | || ||| ||||||||  ||||||||||  |||||| ||||||| ||||||||||||| ||| | | |||| |||||| ||||||||    
T  9625227 tgtcacaaagaccactgacttaggattaaacacaaagtagtacttgaatatgcacttccattatcactttagtctttagtgttaaataattatgttaact 9625326  T
Q  223 gat 225  Q
    |||    
T  9625327 gat 9625329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 5965528 - 5965421
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||  || || |||||||||||| ||||||| |||| |||| | ||||||| | ||||||||||| |||||| ||||| || ||| |||||| |    
T  5965528 tgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttagtctctgacgttaaatgattatgttaagt 5965429  T
Q  223 gatgatgt 230  Q
     |||||||    
T  5965428 aatgatgt 5965421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 28006662 - 28006576
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgat 228  Q
    |||| ||||| || ||||||||| ||||||||| |||| | |||||||||||  | ||| ||||| |||||| ||||||||||||||    
T  28006662 tcagaattaaatataaagtagtccttgaatgtgtacttccgttatcactttaacccctgacgttaaataattctgttaactgatgat 28006576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 28063965 - 28063879
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgat 228  Q
    |||| ||||| || ||||||||| ||||||||| |||| | |||||||||||  | ||| ||||| |||||| ||||||||||||||    
T  28063965 tcagaattaaatataaagtagtccttgaatgtgtacttccgttatcactttaacccctgacgttaaataattctgttaactgatgat 28063879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 28619614 - 28619536
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    |||||||||||| |||||||  |||||||| | |||||||  |||||||||||| |||||| | ||| |||||||||||    
T  28619614 actcaggattaaatacaaagaggtcattgactctgcacttctattatcactttagtctctgacattaaataattttgtt 28619536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 2552068 - 2552134
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgtta 206  Q
    |||||||||||| ||||||||| || ||||||||||| |||| |||||  |||| ||| ||||||||    
T  2552068 actcaggattaaatacaaagtaatccttgaatgtgcattttctttatcggtttagtctatggcgtta 2552134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 12637840 - 12637774
Alignment:
Q  127 acaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcacttta 193  Q
    |||||| || ||||||||||||| | |||||||||||   ||||||||||||| | |||||||||||    
T  12637840 acaaaggtccctaactcaggattgaatacaaagtagttcctgaatgtgcacttccgttatcacttta 12637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 8569447 - 8569528
Alignment:
Q  125 tcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgtta 206  Q
    |||||||| ||| | ||||| |||||| |||||||||||   ||||||||||||||| |||||| |||| || ||| |||||    
T  8569447 tcacaaaggtctttgactcatgattaaatacaaagtagtttatgaatgtgcactttcgttatcagtttagtccctgacgtta 8569528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 29188475 - 29188369
Alignment:
Q  124 gtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactg 223  Q
    ||||||||  |||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| |   || | ||| ||||||||||||||||    
T  29188475 gtcacaaaagtctctatcttaggattaattacaaagtagtcattgaatatgcactttcattatcactttagttcatgacattaaataattttgttaactg 29188376  T
Q  224 atgatgt 230  Q
     ||||||    
T  29188375 ttgatgt 29188369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 39497244 - 39497348
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||| ||  | |||||||||||| |||||| |||| ||||||||||||||||| |||||| |||| |||||| ||||| | | | |||||||||    
T  39497244 tgtcacaaaggtccatgactcaggattaaatacaaaatagttattgaatgtgcactttcgttatcagtttaatctctgtcgttaaaaactcttgttaact 39497343  T
Q  223 gatga 227  Q
    |||||    
T  39497344 gatga 39497348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 36827563 - 36827454
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||| |||||||||  | |||||||||||| || ||| || ||  ||||||| ||||| | ||||||||||| ||||||  |||| |||||||||||||    
T  36827563 gctgtgacaaagatccttgactcaggattaaatataaaataatctctgaatgtacacttccgttatcactttagtctctgatgttaaataattttgttaa 36827464  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  36827463 gtgatgatgt 36827454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 47118120 - 47118040
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||||||| | ||||| ||||  ||| | ||||||||| ||||||||||| || ||| ||||| |||||||||||||    
T  47118120 actcaggattaaatgcaaagaagtctctgactctgcactttcgttatcactttagtccctgacgttaaataattttgttaa 47118040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 19114570 - 19114670
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    ||||||| || || || ||||| |||||| ||||||| ||||| | | | ||||||| | ||||||||||| |||||  ||||| |||||| ||||||||    
T  19114570 tgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatcactttagtctcttacgttaaataattctgttaact 19114669  T
Q  223 g 223  Q
    |    
T  19114670 g 19114670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 53959187 - 53959079
Alignment:
Q  122 ctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaac 221  Q
    |||||||| || ||||| ||||| |||||| ||||||  |||   ||| | ||||||| | ||||||||||| |||||| ||||| | || ||||||||     
T  53959187 ctgtcacataggtctctgactcatgattaaatacaaataagttcatgactctgcacttccgttatcactttagtctctgacgttaaaaaaatttgttaag 53959088  T
Q  222 tgatgatgt 230  Q
    |||||||||    
T  53959087 tgatgatgt 53959079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 21621877 - 21621967
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| |||||| |||||||||||||||||||| | ||||||||||| || |||  |||| |||||| ||||||||||||||||    
T  21621877 actcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgt 21621967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 4703305 - 4703196
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || || ||||||||| ||||| ||||||| |||| |||| ||| ||||| | ||||||||||| |||||||| ||| |||||| | ||||    
T  4703305 gctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatcactttagtctctggcattaaataattctattaa 4703206  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  4703205 gtgatgatgt 4703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 32244755 - 32244670
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    ||||||||||  ||||||||||| |||||||||||| | | ||||||||||| || ||| ||||| |||||||||||||| |||||    
T  32244755 tcaggattaaagacaaagtagtccttgaatgtgcacatccgttatcactttagtccctgacgttaaataattttgttaaccgatga 32244670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 21623184 - 21623096
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||| |||||| ||||| ||||||||||||||   ||||||||||| || | | ||||| |||||| |||||||| |||||||    
T  21623184 tcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgttaaataattatgttaactaatgatgt 21623096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 2786275 - 2786367
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcacttta-ttctc-tggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| |||||| || || |||||||||||||| | |||||| |||| || || || ||||| |||||||||||||||||| ||||    
T  2786275 actcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagttatcatgacgttaaataattttgttaactgataatgt 2786367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 24753603 - 24753540
Alignment:
Q  167 tgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||||   ||||||||||| ||  | |||||| |||||||||||||||||||||||    
T  24753603 tgaatgtgcacttctgttatcactttagtcattcgcgttaaataattttgttaactgatgatgt 24753540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 25810476 - 25810392
Alignment:
Q  146 gattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataa-ttttgttaactgatgatgt 230  Q
    |||||| |||||||||| |  ||||||||||||| |  |||||||||| |||||| ||||| |||| || ||||||||||||||||    
T  25810476 gattaaatacaaagtagcctatgaatgtgcacttccgctatcactttagtctctgacgtta-ataacttctgttaactgatgatgt 25810392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 39869007 - 39869064
Alignment:
Q  173 tgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||| | ||||||||||| |||||| ||||| |||||| |||||| |||||||||    
T  39869007 tgcacttccgttatcactttagtctctgacgttaaataattatgttaagtgatgatgt 39869064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 32244332 - 32244380
Alignment:
Q  144 aggattaattacaaagtagtcattgaatgtgcactttcattatcacttt 192  Q
    ||||||||  |||||||||||||| ||||||||||| | ||||||||||    
T  32244332 aggattaaagacaaagtagtcattaaatgtgcacttccgttatcacttt 32244380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 8975196 - 8975301
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||| || || ||||| |||||| || |||||||||  ||||| ||||||||| ||||||||||| ||| |||||||| ||||||||||||| |    
T  8975196 tgtcacaaaggtccctgactcaagattaaatataaagtagtccatgaatatgcactttcgttatcactttagtctttggcgttaaataattttgttaatt 8975295  T
Q  223 gatgat 228  Q
    ||||||    
T  8975296 gatgat 8975301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 44719387 - 44719482
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgtt 218  Q
    ||||||||||||||||||||||||||||| || ||||||||   ||||| ||||||| | |||||| |||| |||||| | ||| |||||||||||    
T  44719387 tgtcacaaagatctctaactcaggattaaatataaagtagtttatgaatatgcacttccgttatcattttagtctctgtctttaaataattttgtt 44719482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 50107270 - 50107185
Alignment:
Q  142 tcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    |||||||||| |||||| |||||  ||||||||||||| | ||||||||||| ||  |||||||| |||||| |||||||||||||    
T  50107270 tcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatga 50107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 26519188 - 26519105
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgtta 206  Q
    ||||| |||| || ||||||| || |||| |||||||||||| |||||||||||||||  |||||| |||| ||||||||||||    
T  26519188 tgtcataaaggtccctaactccgggttaaatacaaagtagtctttgaatgtgcacttttgttatcagtttaatctctggcgtta 26519105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 5782449 - 5782548
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || ||||| ||||| |||||| ||||||| ||||  ||| | ||||||| | ||||||||||| |||||| ||||| |||||||| ||||    
T  5782449 gctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttcccttatcactttagtctctgacgttaaataattttattaa 5782548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 11060872 - 11060766
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||||||| ||  | |||||  ||||| |||||| |||||  |||||| |||||||| ||||||||||| || | | ||||| |||||| ||||||    
T  11060872 gctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcgttatcactttagtccccgacgttaaataattctgttaa 11060773  T
Q  221 ctgatga 227  Q
    |||||||    
T  11060772 ctgatga 11060766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 32665858 - 32665749
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || ||||| ||||| |||||| ||||||  |||| |||| | ||||||| | ||||||||||| || ||||||||| | || | ||||||    
T  32665858 gctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgttatcactttagtccctggcgttacaaaaatctgttaa 32665759  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  32665758 gtgatgatgt 32665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 39977369 - 39977422
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgca 176  Q
    |||||||||  ||||| |||||||||||| |||||| |||||||||||||||||    
T  39977369 tgtcacaaatgtctctgactcaggattaaatacaaattagtcattgaatgtgca 39977422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 44720891 - 44720838
Alignment:
Q  167 tgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||||||| ||||||||||||| |||||| ||||| |||||||| ||||    
T  44720891 tgaatgtgcacttccattatcactttagtctctgacgttaaataattttattaa 44720838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 6612467 - 6612563
Alignment:
Q  134 tctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||| ||||| |||||| ||||||  ||||  ||| | ||||||| ||||||||||||| || ||| ||||| ||||||||||||| |||| ||||    
T  6612467 tctctgactcatgattaaatacaaacaagtctctgactctgcacttccattatcactttaatccctgacgttaaataattttgttaagtgattatgt 6612563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 18897976 - 18897920
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactt 179  Q
    |||||||||| ||||| |||||||||||| || ||||| ||| ||||||||||||||    
T  18897976 tgtcacaaaggtctctgactcaggattaaatataaagttgtctttgaatgtgcactt 18897920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 1407737 - 1407784
Alignment:
Q  183 ttatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||||||| || ||| ||||| |||||||||||||||||||||||    
T  1407737 ttatcactttagtccctgacgttaaataattttgttaactgatgatgt 1407784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 29765960 - 29766067
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaact 222  Q
    |||||||||| || || |||||  |||||| | |||||||||  || ||||||||||   ||||||||||| ||| | | |||| ||||||||||||| |    
T  29765960 tgtcacaaaggtcactgactcataattaataagaaagtagtctatggatgtgcacttctgttatcactttagtctatagtgttaaataattttgttaatt 29766059  T
Q  223 gatgatgt 230  Q
    ||||||||    
T  29766060 gatgatgt 29766067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 33342497 - 33342560
Alignment:
Q  167 tgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    ||||||||||| | | ||||||||||| |||||| ||||| |||||| |||||| |||||||||    
T  33342497 tgaatgtgcacatacgttatcactttagtctctgacgttaaataattatgttaagtgatgatgt 33342560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 39725390 - 39725483
Alignment:
Q  137 ctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||| |||||| |||||| |||| ||||||| ||||||| | |||| | |||| ||| || ||||| | | ||||||| |||||||||||    
T  39725390 ctaactcatgattaaatacaaaatagttattgaatatgcacttccgttattagtttagtctttgacgttaaaaacttttgttgactgatgatgt 39725483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 9537058 - 9537166
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || ||||| ||| || ||||| ||||||| |||||| || ||||||||| ||||||||||||| || ||| ||||| |||||| || |||    
T  9537058 gctgtcacataggtctctgacttagaattaaatacaaagaagtcat-gactgtgcacttccattatcactttagtcactgacgttaaataattatggtaa 9537156  T
Q  221 ctgatgatgt 230  Q
     |||||||||    
T  9537157 gtgatgatgt 9537166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 16611763 - 16611862
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    ||||||||| || ||||| |||||||||||| ||||||| || |  ||| | ||||||| | ||||||||||| |||||| ||||| |||||| ||||||    
T  16611763 gctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttagtctctgacgttaaataattctgttaa 16611862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 30970663 - 30970567
Alignment:
Q  131 agatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatga 227  Q
    |||||||| ||||| |||||| ||||||||| |||||||||||||| ||   ||||||||||| || ||  | ||| |||||| ||||||| |||||    
T  30970663 agatctctgactcaagattaaatacaaagtaatcattgaatgtgcatttctgttatcactttagtccctaacattaaataattctgttaaccgatga 30970567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 9538118 - 9538028
Alignment:
Q  140 actcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatgt 230  Q
    |||||||||||| ||||||| ||||  ||| ||||||||| | |||||| |||| ||||||  |||| |||||| |||||| |||| ||||    
T  9538118 actcaggattaaatacaaagaagtctctgattgtgcacttccgttatcattttagtctctgatgttaaataattatgttaagtgattatgt 9538028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 24621444 - 24621345
Alignment:
Q  127 acaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatg 226  Q
    |||||| ||||| ||| | |||||| |||||||||||  |||||| ||||||||  |||| | |||| |||||||||||| | | |||||||||||||||    
T  24621444 acaaaggtctctgactaatgattaaatacaaagtagtttttgaatttgcacttttgttattagtttagtctctggcgttacaaacttttgttaactgatg 24621345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 12676556 - 12676477
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggc 202  Q
    |||||||| | |||||  ||||||||||| ||||||||||||  | ||||||||||||  |||||| |||| ||||||||    
T  12676556 tgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgttatcagtttagtctctggc 12676477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 29845516 - 29845620
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||||||  |||||||||| ||| ||| ||||||||||||  | || ||||||||   |||||| |||| |||||||||||| | | |||||||||    
T  29845516 gctgtcacaaaagtctctaactcgggaataaatacaaagtagtc-ctaaacgtgcacttctgttatcagtttagtctctggcgttaaaaacttttgttaa 29845614  T
Q  221 ctgatg 226  Q
     |||||    
T  29845615 ttgatg 29845620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 29350292 - 29350193
Alignment:
Q  125 tcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactga 224  Q
    |||||||| ||||| ||||||||||||  ||||||||||   | |||||||| || ||||||||||||| ||| ||  | || || ||||||||||||||    
T  29350292 tcacaaag-tctcttactcaggattaaagacaaagtagttccttaatgtgcatttccattatcactttaatctttgaagataaatgattttgttaactga 29350194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 5647 - 5742
Alignment:
Q  134 tctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaactgatgatg 229  Q
    ||||| |||||| ||||| ||||||| ||||  ||| | | ||||| | ||||||||||| |||||||||||| |||||| |||||  ||||||||    
T  5647 tctctgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttagtctctggcgttaaataattatgttatgtgatgatg 5742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 1721 - 1825
Alignment:
Q  121 gctgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatgtgcactttcattatcactttattctctggcgttatataattttgttaa 220  Q
    |||||||||||  |||||||||| ||| ||| ||||||||||||  | || ||||||||   |||||| |||| |||||||||||| | | |||||||||    
T  1721 gctgtcacaaaagtctctaactcgggaataaatacaaagtagtc-ctaaacgtgcacttctgttatcagtttagtctctggcgttaaaaacttttgttaa 1819  T
Q  221 ctgatg 226  Q
     |||||    
T  1820 ttgatg 1825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 36609 - 36560
Alignment:
Q  123 tgtcacaaagatctctaactcaggattaattacaaagtagtcattgaatg 172  Q
    |||||||||| |||||||||| ||||||| |||||||||||  |||||||    
T  36609 tgtcacaaaggtctctaactcgggattaaatacaaagtagttcttgaatg 36560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University