View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20529_low_21 (Length: 235)
Name: NF20529_low_21
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20529_low_21 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 74 - 212
Target Start/End: Complemental strand, 33809228 - 33809090
Alignment:
| Q |
74 |
aatcgaagcaaactcattcggtatcacttctcgacccgatgaatccgtcgctaattcaaatccttctttcaccgacggcgtcgccaccgaagatattcac |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33809228 |
aatcgaagcaaactcattcggtatcacttctcgacccgatgaatgcgtcgctaattcaaatccttctttcaccgacggcgtcgccacaaaagatattcac |
33809129 |
T |
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| Q |
174 |
atcgatcctttgacctgggtttagcttcttgttaattat |
212 |
Q |
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| T |
33809128 |
atcgatcctttgacctgggtttagcttcttgttaattat |
33809090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 44257454 - 44257493
Alignment:
| Q |
189 |
tgggtttagcttcttgttaattatgtcatgtgttcatctc |
228 |
Q |
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| T |
44257454 |
tgggtttagcttcttattaattatgtcatgtgttcttctc |
44257493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 39539039 - 39538896
Alignment:
| Q |
78 |
gaagcaaactcattcggtatcacttctcgacccgatgaatccgtcgctaattcaaatccttctttcaccgacggcgtcgccaccgaagatattcacatcg |
177 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
39539039 |
gaagcaaactcattcggtatcacttctccacccgaagaatccgtcgctaattcaaatccttctttcaccgacggcgttgccaccaaagatattcacatcg |
39538940 |
T |
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| Q |
178 |
atcctttgacctgggtttagcttcttgttaattatgtcatgtgt |
221 |
Q |
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| T |
39538939 |
atcctttcacctgggtttagcttcttgttaattacgtcatgtgt |
39538896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 6306839 - 6306688
Alignment:
| Q |
77 |
cgaagcaaactcattcggtatcacttctcgacccgatgaatccgtcgctaattcaaatccttctttcaccgacggcgtcgccaccgaagatattcacatc |
176 |
Q |
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|||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6306839 |
cgaagcaaactcattcagtatcacttctcgacctgaagaatccgtcgctaattcaaatccttctttcaccgacggcgtcgccaccaaagatattcacatc |
6306740 |
T |
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| Q |
177 |
gatcctttgacctgggtttagcttcttgttaattatgtcatgtgttcatctc |
228 |
Q |
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| T |
6306739 |
gatcctttcaccctggtttagcttcttattaattatgtcatgtgttcttctc |
6306688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 20776 - 20627
Alignment:
| Q |
74 |
aatcgaagcaaactcattcggtatcacttctcgacccgatgaatccgtcgctaattcaaatccttctttcaccgacggcgtcgccaccgaagatattcac |
173 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
20776 |
aatcgaagcaaactcattcggtatcacttctccacccgaagaatccgtcgctaattcaaatccttctttcaccgacagcatcgccaccaaagatattcac |
20677 |
T |
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| Q |
174 |
atcgatcctttgacctgggtttagcttcttgttaattatgtcatgtgttc |
223 |
Q |
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||||||||||| | ||| ||||||||||||||||||||||||||||||| |
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| T |
20676 |
atcgatcctttcgcttggatttagcttcttgttaattatgtcatgtgttc |
20627 |
T |
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