View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20529_low_4 (Length: 561)
Name: NF20529_low_4
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20529_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 7 - 542
Target Start/End: Original strand, 50785341 - 50785876
Alignment:
| Q |
7 |
accatagttcccacttccaccacccatttgcactctgctatgatcaccgccaccagaagaagttgagttacttgcaccagtattgtttccaaagcttttg |
106 |
Q |
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| T |
50785341 |
accatagttcccacttccaccacccatttgcactctgctatgatcaccgccaccagaagaagttgagttacttgcaccagtattgtttccaaagcttttg |
50785440 |
T |
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| Q |
107 |
agaagcgaagtcgcagtagtgccatttccattacttgaagttgcacccatttgagcagctttctgaagaagtgcagttgctgacattgatgatatagcag |
206 |
Q |
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| T |
50785441 |
agaagcgaagtcgcagtagtgccatttccattacttgaagttgcacccatttgagcagctttctgaagaagtgcagttgctgacattgatgatatagcag |
50785540 |
T |
|
| Q |
207 |
taccagcagcagcattaatgttactgtttcctccttgggagaaaacattgctgaagagtgatggagcactacttgttccacctgatccattgaagaaatt |
306 |
Q |
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| T |
50785541 |
taccagcagcagcattaatgttactgtttcctccttgggagaaaacattgctgaagagtgatggagcactacttgttccacctgatccattgaagaaatt |
50785640 |
T |
|
| Q |
307 |
tgttccttcattattcacattcaagtgttccgagaatgagttgttgctactgttagtactgttacttgaaaggaaattcggcatgttgaagagattgctg |
406 |
Q |
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| T |
50785641 |
tgttccttcattattcacattcaagtgttcagagaatgagttgttgctactgttagtactgttacttgaaaggaaattcggcatgttgaagagattgctg |
50785740 |
T |
|
| Q |
407 |
ttgttgctattgtggctattctgcatcattaaaccttgttgttgagaaggatcatgagggacaaagttttggtttggctcatgaatgttgttgttgaaga |
506 |
Q |
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| T |
50785741 |
ttgttgctattgtggctattctgcatcattaaaccttgttgttgagaaggatcatgagggacaaagttttggtttggctcatgaatgttgttgttgaaga |
50785840 |
T |
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| Q |
507 |
aggaattaggtctgaaagtagcctgggggagcatgt |
542 |
Q |
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| T |
50785841 |
aggaattaggtctgaaagtagcctgggggagcatgt |
50785876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 12777621 - 12777569
Alignment:
| Q |
140 |
cttgaagttgcacccatttgagcagctttctgaagaagtgcagttgctgacat |
192 |
Q |
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|||||||||||||||||||||| |||||| ||||| | |||||||||||||| |
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| T |
12777621 |
cttgaagttgcacccatttgagaagctttttgaagcaaagcagttgctgacat |
12777569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 40750202 - 40750154
Alignment:
| Q |
146 |
gttgcacccatttgagcagctttctgaagaagtgcagttgctgacattg |
194 |
Q |
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|||| ||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
40750202 |
gttgaacctatttgagctgctttctgaagaagtgcagtagctgacattg |
40750154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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