View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20529_low_5 (Length: 471)

Name: NF20529_low_5
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20529_low_5
NF20529_low_5
[»] chr7 (3 HSPs)
chr7 (18-305)||(33809497-33809784)
chr7 (375-462)||(33809278-33809365)
chr7 (311-347)||(37656882-37656918)
[»] chr4 (4 HSPs)
chr4 (375-462)||(39539092-39539179)
chr4 (319-375)||(16006127-16006183)
chr4 (315-347)||(52909615-52909647)
chr4 (319-375)||(53702133-53702188)
[»] chr2 (2 HSPs)
chr2 (375-462)||(6306892-6306977)
chr2 (319-350)||(2318196-2318227)
[»] chr3 (5 HSPs)
chr3 (315-375)||(35712078-35712138)
chr3 (319-375)||(51994002-51994058)
chr3 (321-375)||(55052332-55052386)
chr3 (319-375)||(40033557-40033613)
chr3 (319-375)||(44960229-44960284)
[»] chr8 (4 HSPs)
chr8 (319-375)||(12199240-12199296)
chr8 (319-375)||(12443668-12443724)
chr8 (315-347)||(22915423-22915455)
chr8 (319-347)||(36928514-36928542)
[»] chr1 (1 HSPs)
chr1 (319-375)||(35152664-35152720)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 33809784 - 33809497
Alignment:
Q  18 attagaattattaattttaattaatagcccttctaacacagcgcttgttttcaggaacattataatcatctaccaagcccagagagacaaacaaaaacag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33809784 attagaattattaattttaattaatagcccttctaacacagcgcttgttttcaggaacattataatcatctaccaagcccagagagacaaacaaaaacag 33809685  T
Q  118 agttcctttgaccatgtagcttgtattctgacaaagtagcttttatgttccattgaggtaaacttgccttgtgcatgtgtagccaaattatggtcagaat 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33809684 agttcctttgaccatgtagcttgtattctgacaatgtagcttttatgttccattgaggtaaacttgccttgtgcatgtggagccaaattatggtcagaat 33809585  T
Q  218 tggtaatctttctcccttaaatttgtgtctcttttccacatcaaccccttatagtagttttgggtaaaagggaaatgatttaaataat 305  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33809584 tggtaatctttcttccttaaatttgtgtctcttttccacatcaaccccttatagtagttttgggtaaaagggaaatgacttaaataat 33809497  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 375 - 462
Target Start/End: Complemental strand, 33809365 - 33809278
Alignment:
Q  375 ttagcaaaacgacatggaaataaacaaatttacccctcttttgtcttcttcaaaacgtgaaaccctcctctactcttctcttctctgc 462  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33809365 ttagcaaaacgacatggaaatagacaaatttacccctcctttgtcttcttcaaaacgtgaaaccctcctcttctcttctcttctctgc 33809278  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 37656882 - 37656918
Alignment:
Q  311 aggaatcatttaaaaattggtctatgtaatcgctaat 347  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  37656882 aggaatcgtttaaaaattggtctctgtaatcgctaat 37656918  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 375 - 462
Target Start/End: Complemental strand, 39539179 - 39539092
Alignment:
Q  375 ttagcaaaacgacatggaaataaacaaatttacccctcttttgtcttcttcaaaacgtgaaaccctcctctactcttctcttctctgc 462  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  39539179 ttagcaaaacgacatgggaatagacaaatttacccctcctttgtattcttcaaaacgtgaaaccctcctcttctcttctcttctctgc 39539092  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 16006183 - 16006127
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    ||||||||||||||| |||| |||||||| ||| || || |||||||||||||||||    
T  16006183 tttaaaaattggtctctgtattcgctaatccttccaatcattaatcatttaaaattt 16006127  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 52909647 - 52909615
Alignment:
Q  315 atcatttaaaaattggtctatgtaatcgctaat 347  Q
    |||||||||||||||||||||||| ||||||||    
T  52909647 atcatttaaaaattggtctatgtattcgctaat 52909615  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 53702188 - 53702133
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    |||||||||||||| ||||| ||| |||||||| || || |||||||||||||||||    
T  53702188 tttaaaaattggtc-atgtattcgttaattcttgcaatcattaatcatttaaaattt 53702133  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 462
Target Start/End: Complemental strand, 6306977 - 6306892
Alignment:
Q  375 ttagcaaaacgacatggaaataaacaaatttacccctcttttgtcttcttcaaaacgtgaaaccctcctctactcttctcttctctgc 462  Q
    ||||||||||||| ||| |||| |||||||||||  || |||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  6306977 ttagcaaaacgacgtgggaatagacaaatttacc--tcctttgtcttcttcaaaacgtgaacccctcctcttctcttctcttctctgc 6306892  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 350
Target Start/End: Original strand, 2318196 - 2318227
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaattct 350  Q
    ||||||||||||||||||||||||||||||||    
T  2318196 tttaaaaattggtctatgtaatcgctaattct 2318227  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 35712078 - 35712138
Alignment:
Q  315 atcatttaaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    |||||||||||||||||| ||||| |||||||| ||| || | ||||||||||||||||||    
T  35712078 atcatttaaaaattggtccatgtattcgctaatccttgcaatgtttaatcatttaaaattt 35712138  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 51994002 - 51994058
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    ||||||||||||||  |||| |||||||| |||||| || |||||||||||||||||    
T  51994002 tttaaaaattggtccctgtattcgctaatccttacaatcattaatcatttaaaattt 51994058  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 55052332 - 55052386
Alignment:
Q  321 taaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    ||||||||||||| |||| |||||||| ||| || || |||||||||||||||||    
T  55052332 taaaaattggtctctgtattcgctaatccttgcaatcattaatcatttaaaattt 55052386  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 40033557 - 40033613
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    ||||||||||| || ||||| |||||||| ||| || || |||||||||||||||||    
T  40033557 tttaaaaattgatccatgtattcgctaatccttgcaatcattaatcatttaaaattt 40033613  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 44960229 - 44960284
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    |||||||||||||| ||| | |||||||| ||| |||| ||||||||||||||||||    
T  44960229 tttaaaaattggtccatg-attcgctaatccttgcattgtttaatcatttaaaattt 44960284  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 12199296 - 12199240
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    ||||||||||||||  ||||||||||||| ||| || || |||||||||||||||||    
T  12199296 tttaaaaattggtccttgtaatcgctaatccttgcaatcattaatcatttaaaattt 12199240  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 12443724 - 12443668
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    ||||||||||||||  ||||||||||||| ||| || || |||||||||||||||||    
T  12443724 tttaaaaattggtccttgtaatcgctaatccttgcaatcattaatcatttaaaattt 12443668  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 22915423 - 22915455
Alignment:
Q  315 atcatttaaaaattggtctatgtaatcgctaat 347  Q
    |||||||||||||||||| ||||||||||||||    
T  22915423 atcatttaaaaattggtccatgtaatcgctaat 22915455  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 36928514 - 36928542
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaat 347  Q
    |||||||||||||||||||||||||||||    
T  36928514 tttaaaaattggtctatgtaatcgctaat 36928542  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 35152720 - 35152664
Alignment:
Q  319 tttaaaaattggtctatgtaatcgctaattcttacattctttaatcatttaaaattt 375  Q
    |||||||||| |||| |||| |||||||| ||| || || |||||||||||||||||    
T  35152720 tttaaaaattagtctctgtattcgctaatccttgcaatcattaatcatttaaaattt 35152664  T

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