View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20529_low_6 (Length: 438)
Name: NF20529_low_6
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20529_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 8755747 - 8755337
Alignment:
| Q |
1 |
aagcggcggagacgaatcttttgaggatgaaaaaggaggctattgaagctttgcctgggggtttgaaggaaactgctttggtgccggatttgacgccttt |
100 |
Q |
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| T |
8755747 |
aagcggcagagacaaatcttttgaggatgaaaaagaaggctattgaagctttgcctgggggtttgaaggaaactgctttggtgccggatttgacgccgtt |
8755648 |
T |
|
| Q |
101 |
tccgatgaatatgtttatggcaacgcttacgccgcctatccatgggtatatcgagaagattaaggaggctgctgataggatcagtgggaaggagaagatt |
200 |
Q |
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| T |
8755647 |
tccgatgaatatgtttatggcaacgcttacgccgcctattgatgggtatattgaggagattaaggaggctgctgataggatcagtgggaaggagaagatt |
8755548 |
T |
|
| Q |
201 |
aggtagattggtagtgttgattttcagggtcccgtccgtcacaggttagtgttaattttgtttgtattgaatccaaattgaaatg-gatttgatttcatt |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||||| |
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| T |
8755547 |
aggtagattggtagtgttgattttcagg-----gtccgtcacaggttagtgttgattttgtttgtattgaatcgaaattgaaaagtgatttgatttcatt |
8755453 |
T |
|
| Q |
300 |
gtttgtattgaatcttggaaataacatggagtgaaactgtttaatcgatgaaatttcattggatatgtttgtttatatcaaatagcgaccatagtagtag |
399 |
Q |
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| T |
8755452 |
gtttgtattgaatcttggaaataacatggagtgaaactgtttaatcgatgaaatttcattggatatgtttgtttatatcaaatagcgaccatagtagtag |
8755353 |
T |
|
| Q |
400 |
tggcattatagtgtag |
415 |
Q |
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| T |
8755352 |
tggcattatagtgtag |
8755337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 10506789 - 10507057
Alignment:
| Q |
1 |
aagcggcggagacgaatcttttgaggatgaaaaaggaggctattgaagctttgcctgggggtttgaaggaaactgctttggtgccggatttgacgccttt |
100 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
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| T |
10506789 |
aagcggcggagactaatcttttgatgatgaaaaaggaggctattgaagctttgcctgggggtttgaaggaagctgctttggtgccggatttgactccatt |
10506888 |
T |
|
| Q |
101 |
tccgatgaatatgtttatggcaacgcttacgccgcctatccatgggtatatcgagaagattaaggaggctgctgataggatcagtgggaaggagaagatt |
200 |
Q |
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|||| |||||| ||||||||| |||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10506889 |
tccggtgaataggtttatggcgacgcttacaccgcctattgatgggtatattgagaagattaaggaggctgctgataggatcagtgggaaggagaagatt |
10506988 |
T |
|
| Q |
201 |
aggtagattggtagtgttgattttcagggtcccgtccgtcacaggttagtgttaattttgtttgtattgaatcc |
274 |
Q |
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| T |
10506989 |
aggtagattggtagtgttgattttgatg-----gttcgtcacaggttagtattgattttgtttgtattgaatcc |
10507057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 10509890 - 10509972
Alignment:
| Q |
185 |
tgggaaggagaagattaggtagattggtagtgttgattttcagggtcccgtccgtcacaggttagtgttaattttgtttgtattgaat |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||||||||||||| |
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| T |
10509890 |
tgggaaggagaagattaggtagattggtagtgttgattttgagg-----gtttgtcacaggttagtgttgattttgtttgtattgaat |
10509972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 10507041 - 10507124
Alignment:
| Q |
298 |
ttgtttgtattgaatcttggaaataacatggagtgaaactg--tttaatcgatgaaatttcattggatatgtttgtttatatca |
379 |
Q |
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|||||||||||||||| || |||||| |||||||||||||| |||||| |||||||| |||||||||||||||| |||||||| |
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| T |
10507041 |
ttgtttgtattgaatcctgcaaataagatggagtgaaactgtctttaattgatgaaatatcattggatatgtttgcttatatca |
10507124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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