View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20529_low_9 (Length: 360)
Name: NF20529_low_9
Description: NF20529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20529_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 30277771 - 30277439
Alignment:
| Q |
18 |
ctttcttcacttttcattaacaccnnnnnnntcattgctaatatgcaaatggaatcttcatctgctcccaggttccggttcagagaccactcactcccgg |
117 |
Q |
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| T |
30277771 |
ctttcttcacttttcattaacaccaaaaaaatcattgctaatatgcaaatggaatcttcatctgctcccaggttccggttcagagaccactcactcccgg |
30277672 |
T |
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| Q |
118 |
agcctcgaaactcgatacactcttcagagccgagctccgacgacgtggtttccgtcctctcactttctaattctaataacagtattgatcaacctgatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30277671 |
agcctcgaaactcgatacactcttcagagccgagctccgacgacgtggtttccgtcctctcactttctaattctaataacagtattgatcgacctgatga |
30277572 |
T |
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| Q |
218 |
caatgccaaacttgatattgaatccatcactggaagggtatactttcatatataattcattttcttttataaataacataatcatcacttcaacatgttt |
317 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30277571 |
caatgccaaactagatattgaatccatcacaggaagggtatactttcatatataattcattttattttataaataacataatcatcacttcaacatgttt |
30277472 |
T |
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| Q |
318 |
cataatatatgttttggtttaataatgatgatg |
350 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
30277471 |
cataatatatgttttggcttaataatgatgatg |
30277439 |
T |
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