View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2052_low_1 (Length: 502)
Name: NF2052_low_1
Description: NF2052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2052_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 25 - 352
Target Start/End: Original strand, 43839055 - 43839382
Alignment:
| Q |
25 |
tcaaactcaccagcctacgtaaatataacaaacgtgtatcagaaaccaatataacattattgaactaaaaacttaacaagcactaaacctactcgataaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43839055 |
tcaaactcaccagcctacgtaaatataacaaacgtgtatcagaaaccaatataacattattgaactaaaaacttaacaagcactaaacctactcgataaa |
43839154 |
T |
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| Q |
125 |
tgtaacgtaatactaatnnnnnnnnnnnnnnnnnncaaacaatgcccaataacaaccaagccaggcaaagatcaatctatttcaccttctcgagttcatc |
224 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43839155 |
tgtaacgtaatactaataaaagaaaaaagaaaaaacaaacaatgcccaataacaaccaagccaggcaaagatcaatctatttcaccttctcgagttcatc |
43839254 |
T |
|
| Q |
225 |
atcttcttcactgtcttcatcagcttcatccctctcctcgcctttctcgtaattatcttcctccttctctaaatactcagtcaattcatctattttcaaa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43839255 |
atcttcttcactgtcttcatcagcttcatccctctcctcgcctttctcgtaattatcttcctccttctctaaatattcagtcaattcatctattttcaaa |
43839354 |
T |
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| Q |
325 |
aatttatcctcaattccaccacctttaa |
352 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43839355 |
aatttatcctcaattccaccacctttaa |
43839382 |
T |
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