View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2052_low_10 (Length: 235)
Name: NF2052_low_10
Description: NF2052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2052_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 29372925 - 29372695
Alignment:
| Q |
5 |
tcttcaatttattcactttcgctccatcccgccaacactccaagtggatgaacaaattattcggggcaataaaattcaattcaagccataaaccaatatt |
104 |
Q |
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| T |
29372925 |
tcttcaatttattcactctcgctccatcccgccaacactccaagtggatgaacaaattattcgaggcaataaaattcaattcaagccataaaccaatatt |
29372826 |
T |
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| Q |
105 |
attacttgaacaatttgatatacttgccaagtgtccctcaagctgcaagcgcgctattatatcttgtaataaaatattgttcctacgagaactttgtcat |
204 |
Q |
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| T |
29372825 |
attacttgaacaatttgatatacttgccaagtgtccctcaagctgcaagcgcgctattatatcttgtaataaaatattgttcctacgagaactttgtcac |
29372726 |
T |
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| Q |
205 |
gaataccaatgacctctttttaatatgatga |
235 |
Q |
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| T |
29372725 |
gaataccaatgacctctttttaatatgatga |
29372695 |
T |
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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 45087928 - 45088011
Alignment:
| Q |
150 |
caagcgcgctattatatcttgtaataaaatattgttcctacgagaactttgtcatgaataccaatgacctctttttaatatgat |
233 |
Q |
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| T |
45087928 |
caagcgcactattatatctcgtaataaaacatcgttcctacgagaactttgttatgaatactgatgaactctttttaatatgat |
45088011 |
T |
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