View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2052_low_1_N (Length: 485)
Name: NF2052_low_1_N
Description: NF2052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2052_low_1_N |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 65 - 476
Target Start/End: Original strand, 1318210 - 1318623
Alignment:
| Q |
65 |
acatgtggcagtataccacatatttcgacacaatttcagttacacttgcacaagtagctatgataccactaaaaggacnnnnnnntgttgacataacttc |
164 |
Q |
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| T |
1318210 |
acatgtggcagtataccacatatttcgacacaatttcagttacacttgcacaagtagctatgatgccactaaaaggacaaaaaaatgttgacataacttc |
1318309 |
T |
|
| Q |
165 |
aacattatgcacattgaatgttgtcatcaaaatcaaatgccacttttgcatctgtgtaatataataaccatagttgttcatcactcattacaaaatacaa |
264 |
Q |
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| T |
1318310 |
aacattatgcacattgaatgttgtcatcaaaatcaaatgccacttttgcatctgtgtaatataataaccatagttgttcatcactcattacaaaatccaa |
1318409 |
T |
|
| Q |
265 |
caccaaaattttcttctttgctagctcaaatctttctaccaatctcttcagaaaccaaaatcttccaatttattaatcttttcaatttggcttgcttctt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1318410 |
caccaaaattttcttctttgctagctcaaatctttcaaccaatctcttcagaaaccaaaatcttccaatttattaatcttttcaatttggcttgcttctt |
1318509 |
T |
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| Q |
365 |
gattatcacaatgaccataaatcatttcattagtggtgaatggtccctgattttggtgcagcctcgtgtgagagtgtatgtttttctcta--tctctacc |
462 |
Q |
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| T |
1318510 |
gattatcacaatgacaataaatcatttcattagtggtgactggtcactgattttggtgcagcctcgtgtgagagtgtatgtttttctctatctctctacc |
1318609 |
T |
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| Q |
463 |
ttaattagtataat |
476 |
Q |
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| T |
1318610 |
ttaattagtctaat |
1318623 |
T |
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