View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2052_low_2 (Length: 286)

Name: NF2052_low_2
Description: NF2052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2052_low_2
NF2052_low_2
[»] chr3 (12 HSPs)
chr3 (19-271)||(28002945-28003197)
chr3 (19-271)||(28036195-28036452)
chr3 (14-271)||(27919130-27919392)
chr3 (26-271)||(11419759-11420009)
chr3 (14-271)||(27459971-27460233)
chr3 (1-153)||(27979373-27979525)
chr3 (14-177)||(28150789-28150953)
chr3 (20-140)||(17745559-17745680)
chr3 (20-140)||(19046879-19047000)
chr3 (44-134)||(28184715-28184805)
chr3 (163-203)||(17745690-17745730)
chr3 (163-203)||(19047010-19047050)
[»] chr2 (1 HSPs)
chr2 (1-261)||(8020387-8020649)
[»] chr4 (1 HSPs)
chr4 (57-153)||(18010676-18010772)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 28003197 - 28002945
Alignment:
Q  19 ttgctgctgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttctacacaaaaaataaaatgtt 118  Q
    ||||| |||||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28003197 ttgctactgatggcatctcttgatgagggacattttcaacaaattcatgctctgtctctagtgtttgttccatttctttctacacaaaaaataaaatgtt 28003098  T
Q  119 tgattcaaatgcattgcattggcgatagttttcatgtggttaggttgaataaatagaatagtattgacctgtgaagaagtgaactcgtttccggatgctt 218  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28003097 tgattcaaatgcattggattggcgatagttttcatgtggttagattgaataaatagaatagtattgacctgtgaagaagtaaactcgtttccggatgctt 28002998  T
Q  219 gaacttcagtgatttctgaacttggatactcattacaagtatcgtggcctttg 271  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28002997 gaacttcagtgatttctgaacttggatattcattacaagtatcgtggcctttg 28002945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 28036452 - 28036195
Alignment:
Q  19 ttgctgctgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgtt-----ccatttctttctacacaaaaaataaa 113  Q
    ||||| |||||||||||||||   |||| | | ||||||||||| ||||||||||| ||||||||| ||     ||||||| |||||||| |||||||||    
T  28036452 ttgctactgatggcatctcttcacgagggaaattttcaacaaattcatgctctgtctctagtgtttcttccatgccatttcattctacaccaaaaataaa 28036353  T
Q  114 atgtttgattcaaatgcattgcattggcgatagttttcatgtggttaggttgaataaatagaatagtattgacctgtgaagaagtgaactcgtttccgga 213  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28036352 atgtttgactcaaatgcattgcattggcgaaagttttcatgtggttaggttaaataaatagaatagtattgacctgtgaagaagtaaactcgtttccgga 28036253  T
Q  214 tgcttgaacttcagtgatttctgaacttggatactcattacaagtatcgtggcctttg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28036252 tgcttgaacttcagtgatttctgaacttggatactcattacaagtatcgtggcctttg 28036195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 27919392 - 27919130
Alignment:
Q  14 tattgttgctgctgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttctacacaaaaaataaa 113  Q
    |||| ||||| |||||||||||| ||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||| ||||||    
T  27919392 tattattgctactgatggcatcttttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttgttctatttctttctgcacaaagaataaa 27919293  T
Q  114 atgtttgattcaaatgcattgcattggcgatagttttc--atgtggttaggttgaataaatagaatagtattgacctgtgaagaagtgaactcgtttccg 211  Q
    ||||||||||||||| ||||| ||||| ||| || |||  ||||||||||||| |||||||||||||| |||||||||||||||||| ||||  | |||     
T  27919292 atgtttgattcaaatacattgtattggtgattgtattcatatgtggttaggttaaataaatagaataggattgacctgtgaagaagtcaactgatgtcca 27919193  T
Q  212 ga---tgcttgaacttcagtgatttctgaacttggatactcattacaagtatcgtggcctttg 271  Q
    ||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27919192 gatgttgcttgaacttcagtgatttctgaacttggatattcattacaagtatcgtggcctttg 27919130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 271
Target Start/End: Complemental strand, 11420009 - 11419759
Alignment:
Q  26 tgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttctacacaaaaaataaaatgtttgattca 125  Q
    |||||| ||||| ||  |||||||| ||||||||||| ||||||||||| ||||||||||| | |||||||||| ||||||||||||  | |||| ||||    
T  11420009 tgatggaatctcatgacgaggaacattttcaacaaatccatgctctgtcactagtgtttgtccaatttctttctgcacaaaaaataatttttttgtttca 11419910  T
Q  126 aatgcattgcattggcgatagttttcat--gtggttaggttgaataaatagaatagtattgacctgtgaagaagtgaactcgtttccggatgctt---ga 220  Q
    ||| ||||||||||| ||| || |||||  |||||||| ||||||||||||||||||||||||||||||||||||   ||||| ||  |||||||   ||    
T  11419909 aatacattgcattggtgattgtattcataggtggttagcttgaataaatagaatagtattgacctgtgaagaagtcggctcgtgtcttgatgcttctcga 11419810  T
Q  221 acttcagtgatttctgaacttggatactcattacaagtatcgtggcctttg 271  Q
     |||| |||||||||||||||||||| |||||| |||||||||||||||||    
T  11419809 gcttcggtgatttctgaacttggatattcattagaagtatcgtggcctttg 11419759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 27459971 - 27460233
Alignment:
Q  14 tattgttgctgctgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttctacacaaaaaataaa 113  Q
    |||||||||| ||||||||||||| |  ||||||||| ||||| ||||| ||||| ||||| | |||| ||||||||||||||||| |||||||||||||    
T  27459971 tattgttgctactgatggcatctccttttgaggaacattttcatcaaattcatgccctgtctcaagtggttgttccatttctttctgcacaaaaaataaa 27460070  T
Q  114 atgtttgattcaaatgcattgcattggcgatagttttc--atgtggttaggttgaataaatagaatagtattgacctgtgaagaagtgaactcgtttccg 211  Q
    ||||||||| |||||  ||||  |||  ||| || |||  || | ||||| || |||||||||||| ||||||||||| |||||||| |||| || |||     
T  27460071 atgtttgatccaaatagattgggttgatgattgtattcgtatattgttagcttaaataaatagaatggtattgacctgcgaagaagtcaacttgtgtcct 27460170  T
Q  212 ga---tgcttgaacttcagtgatttctgaacttggatactcattacaagtatcgtggcctttg 271  Q
    ||   ||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||    
T  27460171 gatgttgcttcaacttcggtgatttctgaacttggatattcattacaagtatcatggcctttg 27460233  T

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Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 27979525 - 27979373
Alignment:
Q  1 aatttgttggtaatattgttgctgctgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttcta 100  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||     
T  27979525 aatttgttggtaatattgttgctactgatggcatgtcttgttgaggaacattttcaacaaattcatgctctgtctctagtgtttgttccatttctttctg 27979426  T
Q  101 cacaaaaaataaaatgtttgattcaaatgcattgcattggcgatagttttcat 153  Q
    || |||||||| |||||||| ||||| | ||||||||||| ||| || |||||    
T  27979425 cataaaaaatagaatgtttgtttcaattacattgcattggtgattgtattcat 27979373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 28150953 - 28150789
Alignment:
Q  14 tattgttgctgctgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttctacacaaaaaataaa 113  Q
    |||| ||||| |||||||||||||||| ||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||| || ||  |||||| ||    
T  28150953 tattattgctactgatggcatctcttgttgaggaacattttcaacaaattcatgctttgtctctagtgtttgttccatttcttcctgcatcaaaaat-aa 28150855  T
Q  114 atgtttgattcaaatgcattgcattggcgatagttttc--atgtggttaggttgaataaatagaat 177  Q
    ||||||||||||||| ||||||||||  ||| || |||  |||||||||  |||||||||||||||    
T  28150854 atgtttgattcaaatacattgcattgatgattgtattcatatgtggttaacttgaataaatagaat 28150789  T

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Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 17745559 - 17745680
Alignment:
Q  20 tgctgctgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttctacac-aaaaaataaaatgtt 118  Q
    |||| |||||||||| ||| |  |||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||    
T  17745559 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttgttccatttctttctgcacaaaaaaataaaatgtt 17745658  T
Q  119 tgattcaaatgcattgcattgg 140  Q
    |||||||||| |||||||||||    
T  17745659 tgattcaaatacattgcattgg 17745680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 19046879 - 19047000
Alignment:
Q  20 tgctgctgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttctacac-aaaaaataaaatgtt 118  Q
    |||| |||||||||| ||| |  |||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||    
T  19046879 tgctactgatggcatttctcgtcgaggaacattttcaacaaattcatgctctgtctctattgtttgttccatttctttctgcacaaaaaaataaaatgtt 19046978  T
Q  119 tgattcaaatgcattgcattgg 140  Q
    |||||||||| |||||||||||    
T  19046979 tgattcaaatacattgcattgg 19047000  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 28184805 - 28184715
Alignment:
Q  44 aggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttctacacaaaaaataaaatgtttgattcaaatgcattg 134  Q
    ||||||| |||| |||| | ||||||||||| || |||||||||   ||| ||||| |||||||||||  |||||||| |||||| |||||    
T  28184805 aggaacattttccacaagttcatgctctgtctctggtgtttgttttgtttttttctgcacaaaaaatagcatgtttgaatcaaatacattg 28184715  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 17745690 - 17745730
Alignment:
Q  163 ttgaataaatagaatagtattgacctgtgaagaagtgaact 203  Q
    ||||||||||||| ||||| |||||||||||||||| ||||    
T  17745690 ttgaataaatagagtagtactgacctgtgaagaagtcaact 17745730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 19047010 - 19047050
Alignment:
Q  163 ttgaataaatagaatagtattgacctgtgaagaagtgaact 203  Q
    ||||||||||||| ||||| |||||||||||||||| ||||    
T  19047010 ttgaataaatagagtagtactgacctgtgaagaagtcaact 19047050  T

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Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 8020649 - 8020387
Alignment:
Q  1 aatttgttggtaatattgttgctgctgatggcatctcttggtgaggaacaatttcaacaaatgcatgctctgtcgctagtgtttgttccatttctttcta 100  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||     
T  8020649 aatttgttggtaatattgttgctactgatggcatctcttgttgaggaacaatttcaacaaattcatgctctgtctctagtgtttgttccatttctttctg 8020550  T
Q  101 cacaaaaaataaaatgtttgattcaaatgcattgcattggcgatagttttc--atgtggttaggttgaataaatagaatagtattgacctgtgaagaagt 198  Q
    ||  |||||||||||||||| ||||||| ||||| ||||| ||| || |||  |||||||||  ||||||||||||||||||||||||| ||||||||||    
T  8020549 catcaaaaataaaatgtttgtttcaaatacattgtattggtgattgtattcatatgtggttaacttgaataaatagaatagtattgacccgtgaagaagt 8020450  T
Q  199 gaactcgtttccggatgcttgaacttcagtgatttctgaacttggatactcattacaagtatc 261  Q
     ||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  8020449 aaactcgtgtccggatgcttgaacttcggtgatttctgaacttggatattcattactagtatc 8020387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 18010772 - 18010676
Alignment:
Q  57 acaaatgcatgctctgtcgctagtgtttgttccatttctttctacacaaaaaataaaatgtttgattcaaatgcattgcattggcgatagttttcat 153  Q
    |||||| ||||||||||| |||||||||||||||||||||||| || |||||||| |||||||| ||||| | ||||||||||| ||| || |||||    
T  18010772 acaaattcatgctctgtctctagtgtttgttccatttctttctgcataaaaaatagaatgtttgtttcaattacattgcattggtgattgtattcat 18010676  T

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