View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2052_low_4 (Length: 342)

Name: NF2052_low_4
Description: NF2052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2052_low_4
NF2052_low_4
[»] chr7 (3 HSPs)
chr7 (35-275)||(44267146-44267386)
chr7 (35-212)||(6997533-6997710)
chr7 (267-329)||(44266486-44266548)
[»] chr2 (2 HSPs)
chr2 (35-213)||(38502983-38503161)
chr2 (272-329)||(38503159-38503216)
[»] chr4 (8 HSPs)
chr4 (35-213)||(46596948-46597126)
chr4 (35-209)||(6678897-6679071)
chr4 (50-213)||(22505884-22506047)
chr4 (272-329)||(6679073-6679130)
chr4 (272-329)||(22505829-22505886)
chr4 (35-149)||(50959495-50959609)
chr4 (262-329)||(50959606-50959676)
chr4 (272-329)||(46596893-46596950)
[»] chr5 (4 HSPs)
chr5 (35-213)||(18380-18558)
chr5 (50-213)||(21291782-21291945)
chr5 (272-329)||(21291943-21292000)
chr5 (272-329)||(18556-18613)
[»] chr6 (1 HSPs)
chr6 (126-248)||(28031522-28031644)
[»] chr8 (2 HSPs)
chr8 (272-327)||(43733852-43733907)
chr8 (175-213)||(43733816-43733854)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 35 - 275
Target Start/End: Complemental strand, 44267386 - 44267146
Alignment:
Q  35 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 134  Q
    |||||||| || || |||||||||||||||||| |||  | |||| ||||   |||||||||||||||| || |||||||||||||| ||||||||||||    
T  44267386 gacatagacacgcgctctggaattagaatcagacggcaccgatctgctttccgccatcaaacgtcaatcgacgcgccgccttcccgcggctttcaatcgc 44267287  T
Q  135 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagaggtcgtttggagatttatttgaa 234  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  44267286 cactgtcatcatttgactcaccttgttgttctgtgttgtttgggaccgtcaacaacacttgggtcccactttttagaggtcgtttggagatttctttgaa 44267187  T
Q  235 gttgattgatttttcgtcagttttttctctgcgtttcaggc 275  Q
    |||||||| |||||||||||||||||||| | |||||||||    
T  44267186 gttgattggtttttcgtcagttttttctcggtgtttcaggc 44267146  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 6997533 - 6997710
Alignment:
Q  35 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 134  Q
    |||||||| || || ||||||||||||||||||  ||  | |||| ||||   |||| |||||||||||||| |||||||||||||||||||||| || |    
T  6997533 gacatagacacgcgctctggaattagaatcagactgcaccgatctgctttccgccattaaacgtcaatcaacgcgccgccttcccgctgctttcagtcac 6997632  T
Q  135 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagag 212  Q
    ||||||||||||||||||||||||||| ||||||||||| | || ||||||| |||||||||||||||||||||||||    
T  6997633 cactgtcatcatctgactcaccttgctcttctgtgttgtttagggccatcaacaacacttgggtcccactttttagag 6997710  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 44266548 - 44266486
Alignment:
Q  267 gtttcaggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 329  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  44266548 gtttcaggcttcgtgggtcattctctgctcactttaatctgccacttttgtcgtgtttcatct 44266486  T

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Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 38502983 - 38503161
Alignment:
Q  35 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 134  Q
    |||||||| || || |||||||||||||||||| |||| | |||| |||| | |||||||||||||||| |||||| |||||||||||||||||||||||    
T  38502983 gacatagacacgcgctctggaattagaatcagacggcgccgatctgctttctgccatcaaacgtcaatcgacacgctgccttcccgctgctttcaatcgc 38503082  T
Q  135 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 213  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  38503083 cactgtcatcatttgactcaccttgctgttctgtgttgtttgggaccatcaacaacacttgggtcccactttttagagg 38503161  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 38503159 - 38503216
Alignment:
Q  272 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 329  Q
    ||||||||||||| ||||||   |||||| |||||||||||||||||||| |||||||    
T  38503159 aggcttcgtgggtcattctcaagtcacttcagtctgccacttttgttgtgattcatct 38503216  T

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Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 35 - 213
Target Start/End: Complemental strand, 46597126 - 46596948
Alignment:
Q  35 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 134  Q
    |||||||| || || |||||||||||||||||| |||| | |||| ||||   |||||||||||||||  |||||| |||||||||||||||||||||||    
T  46597126 gacatagacacgcgctctggaattagaatcagacggcgccgatctgctttccgccatcaaacgtcaattgacacgctgccttcccgctgctttcaatcgc 46597027  T
Q  135 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  46597026 cactgtcatcatctgactcaccttgctgttctgtgttgtttgggaccatcaacaacacttgggtcccactttttagagg 46596948  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 209
Target Start/End: Original strand, 6678897 - 6679071
Alignment:
Q  35 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 134  Q
    |||||||| || || |||||||||||||||||| |||| | |||| ||||   |||||||||||||||| ||| |  |||||||||||||||||||||||    
T  6678897 gacatagacacgcgctctggaattagaatcagacggcgccgatctgctttccgccatcaaacgtcaatcgacatgttgccttcccgctgctttcaatcgc 6678996  T
Q  135 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccacttttta 209  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  6678997 cactgtcatcatctaactcaccttgctgttctgtgttgtttgggaccatcaacaacacttgggtcccacttttta 6679071  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 22506047 - 22505884
Alignment:
Q  50 tctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgccactgtcatcatctg 149  Q
    |||||||||||||||||| |||| | |||| ||||   |||||||||||||||  ||| |  ||||||||| |||||||||||||||||||||||||||     
T  22506047 tctggaattagaatcagacggcgccgatctgctttccgccatcaaacgtcaattgacatgttgccttcccgttgctttcaatcgccactgtcatcatctt 22505948  T
Q  150 actcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 213  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  22505947 actcaccttgctgttctgtgttgtttgggaccatcaacaacacttgggtcccactttttagagg 22505884  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 6679073 - 6679130
Alignment:
Q  272 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 329  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||    
T  6679073 aggcttcgtgggtcattctctggtcactttagtctgccacttttgttgtgattcatct 6679130  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 22505886 - 22505829
Alignment:
Q  272 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 329  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||    
T  22505886 aggcttcgtgggtcattctctggtcactttagtctgccacttttgttgtgattcatct 22505829  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 50959495 - 50959609
Alignment:
Q  35 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 134  Q
    |||||||| || || ||||||||||||||||||  ||| | |||| ||||   ||||||||| |||||| || ||| |||||||||||||||||||||      
T  50959495 gacatagacacgcgctctggaattagaatcagacagcgccgatctgctttccgccatcaaacatcaatcgacgcgctgccttcccgctgctttcaatcat 50959594  T
Q  135 cactgtcatcatctg 149  Q
    ||| |||||||||||    
T  50959595 caccgtcatcatctg 50959609  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 50959606 - 50959676
Alignment:
Q  262 tctgcgtttcaggcttcgtgggtaattctctgctcac-tttagtctgcc-ac-ttttgttgtgtttcatct 329  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||| |||||||||||||    
T  50959606 tctgcgtttcaggcttcgtgggtcattctctgctcacttttagtctgcctactttttattgtgtttcatct 50959676  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 46596950 - 46596893
Alignment:
Q  272 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 329  Q
    ||||||| ||||| || ||||| ||||||||||||||||||||| ||||| |||||||    
T  46596950 aggcttcatgggtcatactctggtcactttagtctgccacttttcttgtgattcatct 46596893  T

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Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 18380 - 18558
Alignment:
Q  35 gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc 134  Q
    |||||||| || || |||||||||||||||||| |||  | |||| ||||   |||||||||||||||| |||||| |||||||||||||||||||||||    
T  18380 gacatagacacgcgctctggaattagaatcagacggccccgatctgctttccgccatcaaacgtcaatcgacacgctgccttcccgctgctttcaatcgc 18479  T
Q  135 cactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 213  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  18480 cactgtcatcatccgactcacctcgctgttctgtgttgtttgggatcatcaacaacacttgggtcccactttttagagg 18558  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 21291782 - 21291945
Alignment:
Q  50 tctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgccactgtcatcatctg 149  Q
    |||||||||||||||||| |||  | |||| ||||   |||||||||||||||| ||| || ||||| || |||||||||||||||| ||||||||||||    
T  21291782 tctggaattagaatcagacggccccgatctgctttccgccatcaaacgtcaatcgacatgctgccttaccactgctttcaatcgccattgtcatcatctg 21291881  T
Q  150 actcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagagg 213  Q
    |||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  21291882 actcaccttgttgttctgtgttgtttgggatcatcaacaacacttgggtcccactttttagagg 21291945  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 21291943 - 21292000
Alignment:
Q  272 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 329  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||    
T  21291943 aggcttcgtgggtaattctctggtcactttagtctaccacttttgttgtgattcatct 21292000  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 18556 - 18613
Alignment:
Q  272 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcatct 329  Q
    ||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||    
T  18556 aggcttcgtgggtcattctctggtctctttagtctgccacttttgttgtgattcatct 18613  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 28031522 - 28031644
Alignment:
Q  126 ttcaatcgccactgtcatcatctgactcaccttgctgttctgtgttgtctgggaccatcaaaaacacttgggtcccactttttagaggtcgtttggagat 225  Q
    |||||| |||||||  ||||| ||||||||||||||||| ||||| || ||||| |||||| |   | |||||||||||||| |||||| | | ||||||    
T  28031522 ttcaattgccactgcaatcatttgactcaccttgctgttttgtgtcgtttgggaacatcaacagtgcgtgggtcccacttttgagaggttgctaggagat 28031621  T
Q  226 ttatttgaagttgattgattttt 248  Q
    || ||| |||||||||| |||||    
T  28031622 ttctttaaagttgattggttttt 28031644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 43733852 - 43733907
Alignment:
Q  272 aggcttcgtgggtaattctctgctcactttagtctgccacttttgttgtgtttcat 327  Q
    ||||||||||||| |||||| | ||||||||||||||||| ||||||||| |||||    
T  43733852 aggcttcgtgggtcattctcaggtcactttagtctgccacgtttgttgtgattcat 43733907  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 43733816 - 43733854
Alignment:
Q  175 tgggaccatcaaaaacacttgggtcccactttttagagg 213  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  43733816 tgggaccatcaacaacacttgggtcccactttttagagg 43733854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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