View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2052_low_5 (Length: 305)
Name: NF2052_low_5
Description: NF2052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2052_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 30 - 300
Target Start/End: Original strand, 40905144 - 40905410
Alignment:
| Q |
30 |
gaaccttgacttgttgtttttctaagggttggggtgttgctgtacttgttggagtgccaaacaaagatgatgcctttcaaacacatcctatgaatttgtt |
129 |
Q |
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| T |
40905144 |
gaaccttgacttgttgtttttctaagggttggggtgttgctgtacttgttggagtgccaaacaaagatgatgcatttcaaacacatcctatgaatttgtt |
40905243 |
T |
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| Q |
130 |
gaatgaaaggactcttaagggtacattttatggaaactacaaaccccgcactgatcttcctaatgttgtagaaaagtacatgaaaggggtaagtttatat |
229 |
Q |
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| T |
40905244 |
gaatgaaaggactcttaagggtacattttatggaaactacaaaccccgcactgatcttcctaatgttgtagaaaagtacatgaaaggggtacgtttata- |
40905342 |
T |
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| Q |
230 |
atgtacatcgaatcgtgcactgttacggaagattaattaatattgcagaatgatatgttatctgtggtgct |
300 |
Q |
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| T |
40905343 |
---tacatcgaatcgtgcactgttacggaagattaattaatattgcagaatgatatgttatttgtgttgct |
40905410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 40881888 - 40882085
Alignment:
| Q |
30 |
gaaccttgacttgttgtttttctaagggttggggtgttgctgtacttgttggagtgccaaacaaagatgatgcctttcaaacacatcctatgaatttgtt |
129 |
Q |
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| T |
40881888 |
gaacctttatttgttgtttttcttagggttggggtgttgctgtacttgttggagtgccaaacaaagatgatgcattcaaaactcatcctatgaatttgtt |
40881987 |
T |
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| Q |
130 |
gaatgaaaggactcttaagggtacattttatggaaactacaaaccccgcactgatcttcctaatgttgtagaaaagtacatgaaaggggtaagtttat |
227 |
Q |
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| T |
40881988 |
gaatgaaaggactcttaagggtaccttttatggaaactacaaaccccgcaccgatcttcctaatgttgtagaaaagtacatgaaaggggtaagtttat |
40882085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 40900603 - 40900791
Alignment:
| Q |
43 |
ttgtttttctaagggttggggtgttgctgtacttgttggagtgccaaacaaagatgatgcctttcaaacacatcctatgaatttgttgaatgaaaggact |
142 |
Q |
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| T |
40900603 |
ttgtttttcttagggttggggtgttgctgtacttgttggagtgccaaacaaagatgatgcatttaaaacacatcctatgaatttgttgaatgaaaggact |
40900702 |
T |
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| Q |
143 |
cttaagggtacattttatggaaactacaaaccccgcactgatcttcctaatgttgtagaaaagtacatgaaaggggtaagtttatatat |
231 |
Q |
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| T |
40900703 |
cttaagggtaccttttatggtaactacaagcctcgcaccgatcttcctaatgttgtagagaagtacatgaaaggggtaagtttttatat |
40900791 |
T |
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