View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2052_low_9 (Length: 270)
Name: NF2052_low_9
Description: NF2052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2052_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 17757508 - 17757718
Alignment:
| Q |
30 |
cagagacgatggtggtggtcaatgaggacgacggagggcgcggtggtgaggattgtggccgcggaggattgtggtggtgaggaaacgtgatagtgggtgg |
129 |
Q |
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| T |
17757508 |
cagagacgatggtggtggtcaatgaggacgacggagggcgcggtggtgaggattgtggccgcggaggattgtggaggtgaggaaacgtgatagtgggtgg |
17757607 |
T |
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| Q |
130 |
gtggtgagataatatgtacacatagtagagaggaagaagagaaggtgtattgtttttacaaaactgccctcgttttaactatgaaatgtccaaattgtcc |
229 |
Q |
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| T |
17757608 |
gtggtgagataatatggacacatagtagagaggaagaagagaaggtgtattgtttttacaaaactgccctcgttttaactatgaaatgtccaaattgtcc |
17757707 |
T |
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| Q |
230 |
atggtgtctgt |
240 |
Q |
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||||||||||| |
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| T |
17757708 |
atggtgtctgt |
17757718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 17766495 - 17766705
Alignment:
| Q |
30 |
cagagacgatggtggtggtcaatgaggacgacggagggcgcggtggtgaggattgtggccgcggaggattgtggtggtgaggaaacgtgatagtgggtgg |
129 |
Q |
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| T |
17766495 |
cagagacgatggtggtggtcaatgaggacgacggagggcgcggtggtgaggattgtggccgcggaggattgtggaggtgaggaaacgtgatagtgggtgg |
17766594 |
T |
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| Q |
130 |
gtggtgagataatatgtacacatagtagagaggaagaagagaaggtgtattgtttttacaaaactgccctcgttttaactatgaaatgtccaaattgtcc |
229 |
Q |
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| T |
17766595 |
gtggtgagataatatggacacatagtagagaggaagaagagaaggtgtattgtttttacaaaactgccctcgttttaactatgaaatgtccaaattgtcc |
17766694 |
T |
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| Q |
230 |
atggtgtctgt |
240 |
Q |
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| T |
17766695 |
atggtgtctgt |
17766705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 12518062 - 12517851
Alignment:
| Q |
30 |
cagagacgatggtggtggtcaatgaggacgacggagggcgcggtggtgaggattgtggccgcggaggattgtggtggtgaggaaacgtgatagtgggtgg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
12518062 |
cagagacgatggtggtggtcaatgaggacgacggagggtgcggtggtgaggattgtggccgcggaggattgtggtcgtgaggaaacgtgatagcgggtgg |
12517963 |
T |
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| Q |
130 |
gtggtgagataatatgtacacatagtagagaggaagaagagaaggtgtattgtttttacaaaactgccctcgttttaactatgaaatgtccaaattgtcc |
229 |
Q |
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| T |
12517962 |
gtggtgagataatacgtacacatagtagagaggaagaagagaaggtgtacggtttttacaaaactgccctcgttttaactatgaaatgtccaaattgtcc |
12517863 |
T |
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| Q |
230 |
a-tggtgtctgt |
240 |
Q |
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| T |
12517862 |
attggtgtctgt |
12517851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 19452281 - 19452192
Alignment:
| Q |
155 |
tagagaggaagaagagaaggtgtattgtttttacaaaactgccctcgt----tttaactatgaaatgtccaaattgtccatggtgtctgt |
240 |
Q |
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||||||||||||||||| ||||||| ||| |||||||||||||| | | ||||||||||||||||||||||||||| | |||||||| |
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| T |
19452281 |
tagagaggaagaagagagggtgtatggttattacaaaactgcccccattttctttaactatgaaatgtccaaattgtccttagtgtctgt |
19452192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 29835637 - 29835543
Alignment:
| Q |
147 |
acacatagtagagaggaagaagagaaggtgtattgtttttacaaaactgccctcgtttt-aactatgaaatgtccaaattgtccatggtgtctgt |
240 |
Q |
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||||| |||||||| || ||||||| ||||| | ||||| |||||||||||| ||||| || ||||||||||| ||| | ||||||||||||| |
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| T |
29835637 |
acacacagtagagaagatgaagagagggtgtgtggttttgacaaaactgcccctgttttaaagtatgaaatgtcttaatcgcccatggtgtctgt |
29835543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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