View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20530_high_1 (Length: 1148)
Name: NF20530_high_1
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_1 |
 | |
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| [»] scaffold0607 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 787; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 136 - 1133
Target Start/End: Original strand, 21703573 - 21704571
Alignment:
| Q |
136 |
aaaaccatcttaaccgttacacctttaagatagtccgaatccattctatcatatgctttgttgatatctaacttcaaagccacacatccatcatttctac |
235 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21703573 |
aaaaccatcttaaccattacacctttaagatagtcccaatccattctatcatatactttgttgatatctaacttcaaagccacacatccatcatttctac |
21703672 |
T |
|
| Q |
236 |
tctttttatttttcatatagtgtataacctggaatgcaaccgttgcgttatcaagaattgtccgtaatgggacaaaagctgaatgagtatcagagatgca |
335 |
Q |
| |
|
||||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
21703673 |
tctttctagttttcatacagtgtataacctggattgcaaccgttgcgttatcaagaattgtccgacatgggacaaaagctgactgagtatcagagatgca |
21703772 |
T |
|
| Q |
336 |
ttgtgacaaaatcaactttagtctatttgaaaggacctttgaaataaacttgtacaaaacattacacagagaaattggacaccaatccttcattgttgtc |
435 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21703773 |
ttgtgacaaaatcaactttagtctatttgcaaggatctttgaaatcaacttgtacaaaacattacatagagaaattggacaccaatccttcattgttgtc |
21703872 |
T |
|
| Q |
436 |
tgaatattttctttaggaataagagtggtgtctgtcatatatagatcagcgggaaactaacccgtatccaaccaacgataacattcagaaaaaatattat |
535 |
Q |
| |
|
||||||||| ||||||||||||||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21703873 |
tgaatatttcctttaggaataagagcgatgtttgtcatatatagatcaacgggaaactgacccgtatccaaccaacgacaacattcagaaaaaatattat |
21703972 |
T |
|
| Q |
536 |
cgccacacaattcccaaaaatgctgatagaaaccggggttaaaaccatcttcccttggacacttgtcaagatggatagagaacattgcagttttaaattc |
635 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
21703973 |
cgccacacaattcctaaaaatgctgatagaaaccggggttaaaaccatctgcccttggacacttgtcaggatgcatacagaacattgcagttttaaattc |
21704072 |
T |
|
| Q |
636 |
atcctttgtgaaaggcttagtgagggaaatattatcttcgtgagacactaatgtgtgaataacatctatgacaggggccgaagagttgtgttgattttgg |
735 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
21704073 |
atcctttgtgaaaggcttagtgagggaaatattatcttcgtgagacattgatgtgtgaataacatctatgataggggccgaagagttgtgttgtttttgg |
21704172 |
T |
|
| Q |
736 |
aataaatttttaaataagattttgcaatggagcgcataccttgatcatctgtatgtttattaccgaaatcatcttcaagagatgtgatacgatttacctt |
835 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
21704173 |
aataaattattaaataagattttgcaatggagcgcataccttgatcatctgtatgtttattgccgaaatcattttcaagagatgtgatacgatttacctt |
21704272 |
T |
|
| Q |
836 |
cctctaagttgactccaccgcgtgaaaaaactttgtatttcggtcaccatccttataccagcgtgcctttgctcattgtctccaataagcatcatcctaa |
935 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |
|
|
| T |
21704273 |
ccttcgagttgactccaccgcgtgaaaatactttgtatttaggtcaccatccttataccagtgtgcctttgctcattgtctccaataagcatcatcttga |
21704372 |
T |
|
| Q |
936 |
accagcaacctatgcatgcgcttgtgtaacagtgacaacaacttttgctcatcaccagtgcggctaatgcgtgcaagatttaattcacgacgacattcct |
1035 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
21704373 |
gccagcaacctatgcatgcgcttgtgtaacagtgccaactgcttttgctcatcaccagtgcgactaatgcgtgcaagattcaattcacgacgacattcct |
21704472 |
T |
|
| Q |
1036 |
caatttcaattttcagcttattacaatgatttctactccacactaccatctcctcagcagaacgt-tgttgacgtgggaggatatcatcttctgaagtg |
1133 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||||||||| |
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|
| T |
21704473 |
caatttcaattttccgcttattacaatgatttctactccacactaccatctccccagcagaacgtcttttgacgcgggaggatatcatcttctgaagtg |
21704571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 21701373 - 21701512
Alignment:
| Q |
1 |
aggtgagggggtagaggatcaccttgacaaggccccctatctgggataatcggaccacccatctcattattaaccaagatagagtaatcgacggattcta |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | |||||||||| | ||||| || |||||||||||||||||||||||||||| | |||||||| |
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|
| T |
21701373 |
aggtaaggggatagaggatcaccttgacaaggccccttgtctgggataaccagaccatccttctcattattaaccaagatagagtaatcaatggattcta |
21701472 |
T |
|
| Q |
101 |
tgcataaagacatccattctatccatttctcagagaaaac |
140 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
21701473 |
tgcataaagacatccattgtatccatttctcagagaaaac |
21701512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 428
Target Start/End: Original strand, 11606720 - 11606781
Alignment:
| Q |
367 |
aggacctttgaaataaacttgtacaaaacattacacagagaaattggacaccaatccttcat |
428 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| || | |||||| | |||||||||||| |
|
|
| T |
11606720 |
aggacctttgaaataagcttatacaaaacattacatagcgcaattggtctccaatccttcat |
11606781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 858 - 1108
Target Start/End: Complemental strand, 18207460 - 18207210
Alignment:
| Q |
858 |
tgaaaaaactttgtatttcggtcaccatccttataccagcgtgcctttgctcattgtctccaataagcatcatcctaaaccagcaacctatgcatgcgct |
957 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||| | ||| |||||||| |||||||||||| |||||||||| ||| |||||||| ||| || | |
|
|
| T |
18207460 |
tgaaagaacttagtatttctgtcaccatccttatactaatgtgtctttgctcgttgtctccaatatgcatcatcctgtgccaacaacctattcatacgtt |
18207361 |
T |
|
| Q |
958 |
tgtgtaacagtgacaacaacttttgctcatcaccagtgcggctaatgcgtgcaagatttaattcacgacgacattcctcaatttcaattttcagcttatt |
1057 |
Q |
| |
|
||||||| | || | ||||| |||| |||| |||| |||||||||||||||||| ||| |||||||| || ||||||| ||||| || || |
|
|
| T |
18207360 |
tgtgtaagactgttagttgaagctgctcttcactggtgcagctactgcgtgcaagatttaatttacggcgacattcttctatttcaagtttcaatttttt |
18207261 |
T |
|
| Q |
1058 |
acaatgatttctactccacactaccatctcctcagcagaacgttgttgacg |
1108 |
Q |
| |
|
||||| || | |||||||| ||||||||||||| ||| |||| |||||||| |
|
|
| T |
18207260 |
acaattatgtttactccactctaccatctcctctgcacaacgatgttgacg |
18207210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 547 - 585
Target Start/End: Original strand, 46093225 - 46093263
Alignment:
| Q |
547 |
tcccaaaaatgctgatagaaaccggggttaaaaccatct |
585 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
46093225 |
tcccaaaaatgttgatagaaacctgggttaaaaccatct |
46093263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 858 - 893
Target Start/End: Complemental strand, 8563105 - 8563070
Alignment:
| Q |
858 |
tgaaaaaactttgtatttcggtcaccatccttatac |
893 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8563105 |
tgaaaaaactttgtatttctgtcaccatccttatac |
8563070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 19823572 - 19823627
Alignment:
| Q |
160 |
ttaagatagtccgaatccattctatcatatgctttgttgatatctaacttcaaagc |
215 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| |||| || | ||||||||| |
|
|
| T |
19823572 |
ttaagatagtcccaatccattctatcataagctttgctgatgtcaagcttcaaagc |
19823627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 547 - 585
Target Start/End: Complemental strand, 214 - 176
Alignment:
| Q |
547 |
tcccaaaaatgctgatagaaaccggggttaaaaccatct |
585 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
214 |
tcccaaaaatgttgatagaaacctgggttaaaaccatct |
176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 547 - 585
Target Start/End: Complemental strand, 6152 - 6114
Alignment:
| Q |
547 |
tcccaaaaatgctgatagaaaccggggttaaaaccatct |
585 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
6152 |
tcccaaaaatgttgatagaaacctgggttaaaaccatct |
6114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 858 - 896
Target Start/End: Complemental strand, 25101769 - 25101731
Alignment:
| Q |
858 |
tgaaaaaactttgtatttcggtcaccatccttataccag |
896 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
25101769 |
tgaaaaaactttgtatttctgtcgccatccttataccag |
25101731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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