View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_high_13 (Length: 434)
Name: NF20530_high_13
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 195 - 413
Target Start/End: Complemental strand, 9309166 - 9308947
Alignment:
| Q |
195 |
tccctcaggttccaacaccaaggattaagtaatctcggatttgggtggctaaaaatatctaatctagttttatatcaatcataattgaagaaatcaaagg |
294 |
Q |
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| T |
9309166 |
tccctcaggttccaacaccaaggatcaagtaatctcggatttgggtggctaaaaatatctaatctagttttatatcaatcataattgaagaaatcaaagg |
9309067 |
T |
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| Q |
295 |
taattcaaatctgaagacaat-caaaaaatcaatatgtacctttaacaaaaatcttggaagtgattctacgaaggaagagatgtcgaaaaacagaagtgc |
393 |
Q |
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| T |
9309066 |
taattcaaatctgaagacaataaaaaaaatcaatatgtacctttaacaaaaatcttggaagtgattctacgaaggaagagatgtcgaaaaacagaagtgc |
9308967 |
T |
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| Q |
394 |
agggttttgagtgagagagc |
413 |
Q |
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| T |
9308966 |
agggttttgagtgagagagc |
9308947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 9309325 - 9309218
Alignment:
| Q |
14 |
tcatcagcaaaattgttaagttggggccatttttctctttttgaaagaacaacacagcagcactactaaaaactagatatgttgaaacaacaactgtagc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9309325 |
tcatcagcaaaattgttaagttggggccatttttctctttttgaaagaacaacacagcagcactactaaaaactagatatgttgaaacaacaactgtagc |
9309226 |
T |
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| Q |
114 |
agcagcaa |
121 |
Q |
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| T |
9309225 |
agcagcaa |
9309218 |
T |
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