View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_high_14 (Length: 425)
Name: NF20530_high_14
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 36722909 - 36722487
Alignment:
| Q |
1 |
ccgctgaagaagctgcacatgcttatgattcagccgcgattaaatttcgcgcttggaaggcgaaaactaatttccctatccctgaacatatccttgcggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36722909 |
ccgctgaagaagctgcacatgcttatgattcagccgcgattaaatttcgcgcttcgaaggcgaaaactaatttccctatccctgaacatatccttgcggc |
36722810 |
T |
|
| Q |
101 |
tgagactgcagctgcggccgctcagaatcctcagcctctggttgctgttgataatcgtcgggctgaggttttgaaatttgttgagcctgaagttgttcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36722809 |
tgagactgcagctgcggccgctcagaatcctcagcctttggttgctgttgataaccgtcgggctgaggttttgaaatttgttgaacctgaagttgttcag |
36722710 |
T |
|
| Q |
201 |
gttaattggcctacttcaagcagtatgagtagtactgttgaatctttgactgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36722709 |
gttaattggcctacttcaagcagtatgagtagtactgttgaatctttgagtgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgttt |
36722610 |
T |
|
| Q |
301 |
ccagggttcctattgt---------tggtggtggagctgctcaagctgttggtgctgctggtgctcgtgctggcgaaaaatttcatagtggctgtgattc |
391 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
36722609 |
ccagggttcctattgttgctggtgctggtggtggagctgctcaacctgttggtgctgctgctgctcgtgctggcaaaaaatttcatagtggctgtgattc |
36722510 |
T |
|
| Q |
392 |
atctacatctgctgttgatgatg |
414 |
Q |
| |
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| T |
36722509 |
atctacatctgctgttgatgatg |
36722487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 36710046 - 36709615
Alignment:
| Q |
1 |
ccgctgaagaagctgcacatgcttatgattcagccgcgattaaatttcgcgcttggaaggcgaaaactaatttccctatccctgaacatatccttgcggc |
100 |
Q |
| |
|
|||| ||| |||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
36710046 |
ccgcagaacaagccgcacttgcgtatgattcagccgcgattaaatttcgcgcttcgaaggcgaaaactaatttccctattcctgaacatattcttgcggc |
36709947 |
T |
|
| Q |
101 |
tg------agactgcagctgcggccgctcagaatcctcagcctctggttgctgttgataatcgtcgggctgaggttttgaaatttgttgagcctgaagtt |
194 |
Q |
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|| |||||||||| | ||||||||| ||||||||||||| || |||||||||||| || | ||||||||||||||||||||||||||| || ||| |
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| T |
36709946 |
tgcggctgagactgcagccgtggccgctcaaaatcctcagcctccggctgctgttgataaccggccggctgaggttttgaaatttgttgagccagatgtt |
36709847 |
T |
|
| Q |
195 |
gttcaggttaattggcctacttcaagcagtatgagtagtactgttgaatctttgactgggcctaggattgttcaggttgttggttcttcgtcttcttctg |
294 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| | ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36709846 |
gttcaggttaattggcctacttcaagcggtatgagtagtaccgttgagtctttcagtgggcctaggattgttcagcttgttggttcttcgtcttcttctg |
36709747 |
T |
|
| Q |
295 |
ctgtttccagggttcctattgttggtg------------gtggagctgctcaagctgttggtgctgctggtgctcgtgctggcgaaaaatttcatagtgg |
382 |
Q |
| |
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||||||||||||||||| |||||||| |||||| ||||||||||||||||| |||||||||| ||||||| ||| | ||||||||||| |
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| T |
36709746 |
ttgtttccagggttcctactgttggtggtggtgctggtggtggagttgctcaagctgttggtggtgctggtgctggtgctggtgaagattttcatagtgg |
36709647 |
T |
|
| Q |
383 |
ctgtgattcatctacatctgctgttgatgatg |
414 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |
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|
| T |
36709646 |
ttgtgattcatcttcatctgttgttgatgatg |
36709615 |
T |
|
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