View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20530_high_16 (Length: 382)
Name: NF20530_high_16
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 27747685 - 27747334
Alignment:
| Q |
19 |
gatcggtgggatcaatagcatagtcaggagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747685 |
gatcggtgggatcaatagcatagtcaggagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataat |
27747586 |
T |
|
| Q |
119 |
aacattctcctttcccattttgtccttccnnnnnnnaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747585 |
aacattctcctttcccattttgtccttcctttttttaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactca |
27747486 |
T |
|
| Q |
219 |
agctcttctttgcttgctttgtcaacagcaactatatccatatgattgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747485 |
agctcttctttgcttgctttgtcaacagcaactatatccatatgattgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaa |
27747386 |
T |
|
| Q |
319 |
tgaactcatttgctgctttaataacttgttgatcactatcatcatctgatga |
370 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27747385 |
tgaactcatttgctgcttcaataacttgttgatcactatcatcatctgatga |
27747334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 38527379 - 38527452
Alignment:
| Q |
166 |
tatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttg |
239 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
38527379 |
tatatcccttgagaccagtacctgtccccttgtcatcagcaagcaacagttcaagctcttctttgcttgctttg |
38527452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 49518314 - 49518111
Alignment:
| Q |
19 |
gatcggtgggatcaatagcatagtcaggagaagagaaaaaatgtgcaa---aacgtggatcatcactatatgtactgtttggaactttaccctcatcaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49518314 |
gatcggtgggatcaatagcatagtcaggaga---gaaaagaagtgcaacaaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaat |
49518218 |
T |
|
| Q |
116 |
aataacattctcctttcccattttgtccttccnnnnnnnaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataac |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
49518217 |
aataacattctccttccccattttgtccttcctttttttaaattttagattatatcccttgagaccagtttctatccccttgtcatcaggaagcaatagt |
49518118 |
T |
|
| Q |
216 |
tcaagct |
222 |
Q |
| |
|
||||||| |
|
|
| T |
49518117 |
tcaagct |
49518111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 49518065 - 49517956
Alignment:
| Q |
264 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaat---gaactcatttgctgctttaataacttgttgatcactatcat |
360 |
Q |
| |
|
|||||| |||||||| ||| || ||||||||||||||||||| |||||||||||| |||||||| |||| ||| | || |||||||||||||||||| |
|
|
| T |
49518065 |
ttgtcatttttactcatttgtgctttcttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattagcttgttgatcactatcat |
49517966 |
T |
|
| Q |
361 |
catctgatga |
370 |
Q |
| |
|
|||||||||| |
|
|
| T |
49517965 |
catctgatga |
49517956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University