View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_high_27 (Length: 246)
Name: NF20530_high_27
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34876760 - 34876986
Alignment:
| Q |
1 |
agaagaagagtgtaacccaacatggcctactacattttgacacgtggaagaatgagtaatttcatgcgtacacatacacttcatcattgttgattgtggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34876760 |
agaagaagagtgtaacccaacatggcctactacattttgacacgtggaagaatgagtaatttcatgcgtacacatacacttcatcattgttgatagtggg |
34876859 |
T |
|
| Q |
101 |
acatggtagtagtaccatgtgattctgtatacgaaacattggtttgaggtcaataatgtgtctttaaaaactacaaagatctttcctcgtgttgtactgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34876860 |
acatggtagtagtaccatgtgattctgtatacgaaacattggtttgaggtcaataatgtgtctttgaaaactacaaagatctttcctcgtgttgtactgc |
34876959 |
T |
|
| Q |
201 |
tgtgatcacaaggacattagtactatt |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
34876960 |
tgtgatcacaaggacattagtactatt |
34876986 |
T |
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