View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_high_28 (Length: 246)
Name: NF20530_high_28
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 280071 - 280301
Alignment:
| Q |
1 |
tcaaagtattggaaggtattggcctgcaatgcttgctgaaaataaaggatgcagtgacacatgtgattatagaggagaatataatgctgataaatgtttg |
100 |
Q |
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| T |
280071 |
tcaaagtattggaaggtattggcctgcaatgcttgctgaaaataaaggatgcagtgacacatgtgattatagaggagaatataatgctgataaatgtttg |
280170 |
T |
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| Q |
101 |
agtggttgtggagaaccatctcaaaggttttaccatgtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggttttg |
200 |
Q |
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| T |
280171 |
agtggttgtggagaaccatctcaaaggttttaccatgtgccaaggtcattcttaaataatgatgtaaacacgttggttttgtttgaggaaatgggttttg |
280270 |
T |
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| Q |
201 |
gtgcaacccctttcaatgcgtctatccaaac |
231 |
Q |
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| T |
280271 |
atgcaacccctttcaatgcgtctgtccaaac |
280301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 290571 - 290657
Alignment:
| Q |
137 |
gtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggttttggtgcaacccctttcaatgcgtct |
223 |
Q |
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| T |
290571 |
gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagagctgggtctaggtgaaggccctttcaatgtgtct |
290657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 24525623 - 24525709
Alignment:
| Q |
137 |
gtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggttttggtgcaacccctttcaatgcgtct |
223 |
Q |
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| T |
24525623 |
gtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggtctgggtgaaggccctttcaatgtgtct |
24525709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 24532295 - 24532354
Alignment:
| Q |
137 |
gtgccaaggtcattcttaaatatcgatgtaaacacgttggttttgtttgaggaaatgggt |
196 |
Q |
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||||||||| ||||||| |||| ||||||||||| ||||| |||||||||||| ||||| |
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| T |
24532295 |
gtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggt |
24532354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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