View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_high_3 (Length: 793)
Name: NF20530_high_3
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 222 - 782
Target Start/End: Original strand, 8336170 - 8336721
Alignment:
| Q |
222 |
gtacatgttactgcagggagcagttttgacaatgggtcaacaactgaactatttccaacaatacataacaaagttgagaggaattgttggaaatgaaaga |
321 |
Q |
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| T |
8336170 |
gtacatgttactgcagggagcagttttgacaatgggacaacaactgaactatttccaacaatacataacaaagttgagaggaattgttggaaatgaaaga |
8336269 |
T |
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| Q |
322 |
gcagctgatatcatatctaaagcattgtttataatatcatctggaaacaatgatgttgcattcgcttattcctttactccaaggcacttcttgcctttca |
421 |
Q |
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| T |
8336270 |
gcagctgatatcatatctaaagcattgtttataatatcatcaggaaacaatgatgttgcattcgcttattcctttactccaaggcacttcttgcctttca |
8336369 |
T |
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| Q |
422 |
atgtatattccaatatgttagtttctgccggccaaaatttcctcaaggtttgtttctttctttctctgtatttatcaatccaaaattaattctttcatat |
521 |
Q |
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| T |
8336370 |
atgtatattccaatatgttagtttctgccggccaaaatttcctcaaggtttgtttctttgtatctctc---------atccaaaattaattctttcatat |
8336460 |
T |
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| Q |
522 |
taattaactttgattgttaatcctaattatagagtctatatcaattgggagcacgacatgtgtgggttctaagtacacttccattagggtgcttacctgc |
621 |
Q |
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| T |
8336461 |
taattaactttgattgttaatcctaattatagagtctatatcaattgggagcacgacatgtgtgggttctaagtacacttccattagggtgcttacctgc |
8336560 |
T |
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| Q |
622 |
agctagatctacaatgggaggaccattaagggtttgtgtagattttgagaatgggttagcaacacaatacaataacatgttacagcaggggctcgcaact |
721 |
Q |
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| T |
8336561 |
agctagatctacaatgggaggaccattaagggtttgtgtagattttgagaatgggttagcagcacaatacaataacatgttacagcaggggcttgcaact |
8336660 |
T |
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| Q |
722 |
gttaaaggctcccttcctgattatgatattagatttgttgatgtctatactcctatgcttc |
782 |
Q |
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| T |
8336661 |
gttaaaggctcccttcctgattatgatattagatttgttgatgtctatactcctatgcttc |
8336721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 8335971 - 8336103
Alignment:
| Q |
27 |
gcgtcggcattgggagtaaaagacacattgccagcattcctgaacccatctttaacatctcaagaccttgttaccggggtatgctttgcatcaggtggat |
126 |
Q |
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| T |
8335971 |
gcgtcggcattgggagtaaaagacacattgccagcattcctgaacccatctttaacatctcaagaccttgttaccggggtatgctttgcatcaggtggat |
8336070 |
T |
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| Q |
127 |
cagggtttgacgatatgacagcaaacgcacagg |
159 |
Q |
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| T |
8336071 |
cagggtttgacgatatgacagcaaacgcacagg |
8336103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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