View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20530_high_33 (Length: 236)
Name: NF20530_high_33
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7133993 - 7133773
Alignment:
| Q |
1 |
attaatcatgtcttttcactcttaagcttcaatggctatttcagcagtaacacataaagggccttgtttgctttgtatcacaaataggtacattcaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7133993 |
attaatcatgtcttttcactcttaagcttcaatggctatttcagcagtaacacataaatggccttgtttgctttgtatcacaaataggtacattcaaatt |
7133894 |
T |
|
| Q |
101 |
gagaagatctaagttaactatggtggtttcaagagggaattaaaatgattctgaccatatcagttcaaaacagctaccatacacccccatacaaagcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7133893 |
gagaagatctaagttaactatggtggtttcaagagggaattaaaatgattctgaccatatcagttcaaaacagctaccatacacccccatacaaagcatt |
7133794 |
T |
|
| Q |
201 |
taactatgacctcgttctccc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7133793 |
taactatgacctcgttctccc |
7133773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 7125171 - 7125012
Alignment:
| Q |
1 |
attaatcatgtcttttcactcttaagcttcaatggctatttcagcagtaacacataaagggccttgtttgctttgtatcacaaataggtacattcaaatt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7125171 |
attaatcacgtcttttcactcttaagcttcaatgactatttcagcagtaacacataaatgacattgtttgctttgtatcacaaataggtacattccaatt |
7125072 |
T |
|
| Q |
101 |
gagaagatctaagttaactatggtggtttcaagagggaattaaaatgattctgaccatat |
160 |
Q |
| |
|
||||||||| |||||||||||||| |||| |||||| | |||||||||| ||| ||||| |
|
|
| T |
7125071 |
gagaagatccgagttaactatggtgatttcgagagggtaataaaatgattttgatcatat |
7125012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 7128568 - 7128421
Alignment:
| Q |
7 |
catgtcttttcactcttaagcttcaatggctatttcagcagtaacacataaagggccttgtttgctttgtatcacaaataggtacattcaaattgagaag |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
7128568 |
catgtcttttcactcttaagattcaatggctattttagcagtaacacataaacgaccttgtttgctttgtgtcacaaataggaacattccaattgagaag |
7128469 |
T |
|
| Q |
107 |
atctaagttaactatggtggtttcaagagggaattaaaatgattctga |
154 |
Q |
| |
|
||| |||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
7128468 |
atcctagttaactatggtggtctcgagagggaaataaaatgattctga |
7128421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 11956784 - 11956731
Alignment:
| Q |
82 |
aaataggtacattcaaattgagaagatctaagttaactatggtggtttcaagag |
135 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
11956784 |
aaataggtacattccgattgaggagatcccagttaactatggtggtttcaagag |
11956731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 10062224 - 10062330
Alignment:
| Q |
1 |
attaatcatgtcttttcactcttaagcttcaatggctatttcagcagtaacacataaagggccttgtttgctttgtatcacaaataggtacattcaaatt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| | |||||||| ||||| || | |
|
|
| T |
10062224 |
attaatcatgtcttttcacacttaagcttcaatggctatttcagcagtaacacataaatgaccttgtttgcttggtattaaaaataggtgcattccaact |
10062323 |
T |
|
| Q |
101 |
gagaaga |
107 |
Q |
| |
|
||||||| |
|
|
| T |
10062324 |
gagaaga |
10062330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University