View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_high_7 (Length: 598)
Name: NF20530_high_7
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 3361062 - 3361640
Alignment:
| Q |
1 |
ctggtgcatgttcagtaacattgaggatgttctcatctagatgctgcttcaaattgaagaaaaacacagttaagtttgataccaagtgtgaagaagatta |
100 |
Q |
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| T |
3361062 |
ctggtgcatgttcagtaacattcaggatgttctcatctagatgctgcttcaaattgaagaaaaacacagttaagtttgataccaagtgtgaagaagatta |
3361161 |
T |
|
| Q |
101 |
atatttgtgtgcaagaagaaacaacaatatcatctaaagcactgaacttcatgtaattaaagccaaaccttgccatgagaatcttgccgatgatcttcaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
3361162 |
atatttgtgtacaagaagaaacaacaatatcatctaaagcactgaacttcatgtaa----agccaaaccttgccatgtgaatcttgccgatgatcttcaa |
3361257 |
T |
|
| Q |
201 |
gtaaagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgac |
300 |
Q |
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| T |
3361258 |
gtaaagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgac |
3361357 |
T |
|
| Q |
301 |
tgcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3361358 |
cgcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcaatacaggccaaatcattctcaaggcacaag |
3361457 |
T |
|
| Q |
401 |
agatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361458 |
agatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatct |
3361557 |
T |
|
| Q |
501 |
catctgcaaaactcaacagaaagctacagtaaattatcaacatacacggtgggatttatctcctcgaattagtcagtcctatg |
583 |
Q |
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| T |
3361558 |
catctgcaaaactcaacagaaagctacagtaaattatcaacatagacggttgaatttgtctcctcgaattagtcagtcctatg |
3361640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 206 - 534
Target Start/End: Original strand, 35907360 - 35907688
Alignment:
| Q |
206 |
gccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcag |
305 |
Q |
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| T |
35907360 |
gccttcactatttcatgaagtctctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaa |
35907459 |
T |
|
| Q |
306 |
cgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatc |
405 |
Q |
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| T |
35907460 |
catcaagctggttgattttttctgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagatt |
35907559 |
T |
|
| Q |
406 |
attttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatct |
505 |
Q |
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| T |
35907560 |
catttccaattgctcaatctcattatctgcattggtgatcatacatctcaaaacctgaacacagcacttctcatccttggcatcttcctccatatcatct |
35907659 |
T |
|
| Q |
506 |
gcaaaactcaacagaaagctacagtaaat |
534 |
Q |
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||||||||||||| |||||| |||||||| |
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| T |
35907660 |
gcaaaactcaacaaaaagctccagtaaat |
35907688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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