View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_high_9 (Length: 483)
Name: NF20530_high_9
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 202 - 474
Target Start/End: Complemental strand, 21701195 - 21700924
Alignment:
| Q |
202 |
tctaacggtttatgaggcagtgtcaggccagcctattagtctcccaaaattagagatttactatagtcgtaatgtttcgtctgaattgaaaggtacaata |
301 |
Q |
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| T |
21701195 |
tctaacggtttatgaggcagtgtcgggacaagctattagtcttccaaaatcaaagatttactgtagtcgtaatgtttcatctgaattgaaaggtacaata |
21701096 |
T |
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| Q |
302 |
gctgacacaatgggtgtccagtctgtgttgggtactggtaaatatctggggttaccatcaatgatcgatagagataaaaagtcaacgtttggctacatta |
401 |
Q |
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| T |
21701095 |
gctgacacaatgggtgtccagtctgtgttgggtactggtaaatatct-gggttaccatcaatgatcgatagagataaaaattcaacgtttggctaaatta |
21700997 |
T |
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| Q |
402 |
aggaccaagtgtggaatcacatcaattcatggattagtaaatgtctttctaaggcaggtcaagaagtgatgat |
474 |
Q |
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| T |
21700996 |
aggaccgcgtgtggaatcgcatcaattcatggattagtaaatgtctttctaaggcaggtcaagaagtgatgat |
21700924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 21701373 - 21701512
Alignment:
| Q |
1 |
aggtgagggggtagaggatcaccttgacaaggccccctatctgggataatcggaccacccatctcattattaaccaagatagagtaatcgacggattcta |
100 |
Q |
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| T |
21701373 |
aggtaaggggatagaggatcaccttgacaaggccccttgtctgggataaccagaccatccttctcattattaaccaagatagagtaatcaatggattcta |
21701472 |
T |
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| Q |
101 |
tgcataaagacatccattctatccatttctcagagaaaac |
140 |
Q |
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| T |
21701473 |
tgcataaagacatccattgtatccatttctcagagaaaac |
21701512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 21703573 - 21703644
Alignment:
| Q |
136 |
aaaaccatcttaaccgttacacctttaagatagtccgaatccattctatcatatgctttgttgatatctaac |
207 |
Q |
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| T |
21703573 |
aaaaccatcttaaccattacacctttaagatagtcccaatccattctatcatatactttgttgatatctaac |
21703644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 19823572 - 19823612
Alignment:
| Q |
160 |
ttaagatagtccgaatccattctatcatatgctttgttgat |
200 |
Q |
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| T |
19823572 |
ttaagatagtcccaatccattctatcataagctttgctgat |
19823612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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