View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_10 (Length: 480)
Name: NF20530_low_10
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_10 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 12 - 480
Target Start/End: Original strand, 279584 - 280070
Alignment:
| Q |
12 |
aagcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggattttttacgggtacacaacatggt------------------tt |
93 |
Q |
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| T |
279584 |
aagcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggatttttgacgggtacacaacatggtaccgttagtcaacctggttt |
279683 |
T |
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| Q |
94 |
tatacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatg |
193 |
Q |
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| T |
279684 |
tatacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagtaggtcatgcaaattacggtgcgttctttgatatg |
279783 |
T |
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| Q |
194 |
caagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279784 |
caagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttg |
279883 |
T |
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| Q |
294 |
ggataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggta |
393 |
Q |
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| T |
279884 |
ggataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggta |
279983 |
T |
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| Q |
394 |
taagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatgg |
480 |
Q |
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| T |
279984 |
taagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatgg |
280070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 113 - 477
Target Start/End: Original strand, 290148 - 290512
Alignment:
| Q |
113 |
tctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttg |
212 |
Q |
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| T |
290148 |
tctttgaaacaaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttg |
290247 |
T |
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| Q |
213 |
ggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaa |
312 |
Q |
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| T |
290248 |
gcggtcctgcgaaactcatttcaactgaatatccaaacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctag |
290347 |
T |
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| Q |
313 |
aaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacc |
412 |
Q |
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| T |
290348 |
aaagttctatgatcccaaatctaccaatgtagttccatggcaaacacgtaatgtttctatagaaggaccaatgacttggtacaagaccactttcaagacc |
290447 |
T |
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| Q |
413 |
cctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaa |
477 |
Q |
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| T |
290448 |
cctgaaggttcaaaccttgtagtcctggatttgataggtcttcaaagaggaaaagcatgggttaa |
290512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 124 - 480
Target Start/End: Original strand, 24531886 - 24532239
Alignment:
| Q |
124 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttgggggtcctgta |
223 |
Q |
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| T |
24531886 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttgggggtcatgtt |
24531985 |
T |
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| Q |
224 |
aaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctatg |
323 |
Q |
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|||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
24531986 |
aaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtatggctagaaagttctatg |
24532085 |
T |
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| Q |
324 |
atcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggtac |
423 |
Q |
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| T |
24532086 |
atcccaaa---tctaatggagttccatggataccacgtaatgtttctataggagtaccaatgacttggtacaagaccactttcaagacccctgaagggtc |
24532182 |
T |
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| Q |
424 |
aaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatgg |
480 |
Q |
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| T |
24532183 |
aaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatgg |
24532239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 124 - 480
Target Start/End: Original strand, 24525213 - 24525567
Alignment:
| Q |
124 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttggggg-tcctgt |
222 |
Q |
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| T |
24525213 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttggggggtcatgt |
24525312 |
T |
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| Q |
223 |
aaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctat |
322 |
Q |
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| T |
24525313 |
gaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggatgaatggtatggctagaaagttctaa |
24525412 |
T |
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| Q |
323 |
gatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggta |
422 |
Q |
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| T |
24525413 |
gatcccaga---tctaatggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctaaagggt |
24525509 |
T |
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| Q |
423 |
caaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatgg |
480 |
Q |
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|||||| |||||| |||| |||||||||||||| | |||| |||||||||||||||| |
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| T |
24525510 |
caaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatgg |
24525567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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