View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_11 (Length: 462)
Name: NF20530_low_11
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_11 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 274 - 462
Target Start/End: Original strand, 14153668 - 14153856
Alignment:
| Q |
274 |
atttctacaaacttaagtgattatcgattttatacttaaatgattataccattaaattaaacgttgagaatttatcatggacttgtaagatggaactttg |
373 |
Q |
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| T |
14153668 |
atttctacaaacttaagtgattatcgtttttatacttaattgattatactattaaattaaacgttgagaatttatcatggacttgtaagatggaactttg |
14153767 |
T |
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| Q |
374 |
aacaattgaatctgacctttgactgccttccaaagaacatctgcatcttccttaggagaatgattcataggagcaatgagagtagccat |
462 |
Q |
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| T |
14153768 |
aacaattgaatctgacctttgactgccttccaaagtacatctgcatcttccttaggagaatgattcataggagcaatgagagtagccat |
14153856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 14153418 - 14153317
Alignment:
| Q |
1 |
ttttaagtcggctgaaaccgacttgaaaagtgattatacagctgtaaaatgtgcccaaccgcagttaactgccgttgtataccatttataagatagggaa |
100 |
Q |
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| T |
14153418 |
ttttaagtcggctgaaatcgacttgaaaagtgattatactgctgtaaaatgtgcccaaccgcagttaactgccgctgtataccatttataagatagggaa |
14153319 |
T |
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| Q |
101 |
aa |
102 |
Q |
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| T |
14153318 |
aa |
14153317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 14153489 - 14153603
Alignment:
| Q |
96 |
gggaaaagtaactcttaattacgaatttgaaactcaaagtatcacagttaaattaacggtattcaaggagaactttgaataatcacttaagtttgtag-a |
194 |
Q |
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| T |
14153489 |
gggaaaagtaactcttaattaccaatttgaaactcaaagtatcactatcaaattaacggtattcaaggggaactttgaataatcacttaagtttgtagaa |
14153588 |
T |
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| Q |
195 |
actcgggaagatatg |
209 |
Q |
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| T |
14153589 |
acttgggaagatatg |
14153603 |
T |
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