View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_12 (Length: 456)
Name: NF20530_low_12
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 36203240 - 36202813
Alignment:
| Q |
17 |
atgaatatgaaatttgaaatactttttacctaccaacagcttttattatataactaacttcatttatttctattttaaacacttcgaagnnnnnnnnnnn |
116 |
Q |
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| T |
36203240 |
atgaatatgaaatttgaaatactttttacctaccaacagcttttattatataactaacttcatttatttatattttaaacacttcaaagttttttttttt |
36203141 |
T |
|
| Q |
117 |
--gacaattaaaacacttgaagttgaatgcataaaaagtactcactgnnnnnnnnnn---caggttataagttacacgcacctctcataagtcatatcat |
211 |
Q |
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| T |
36203140 |
ttgacaattaaaacacttgaagttgaatgcataaaaagtactcactgaaagaaaaaaaaacaggttataagttacacgcacctctcataagtcatatcat |
36203041 |
T |
|
| Q |
212 |
tattgctctatctcttttttcctgcttataaatatgaaacaagctttacatccatatatgcctatttctttatagaagccactttgctttattattaaca |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36203040 |
tattgctctatcttttttttcctgcttataaatatgaaacaagctttacatccatatatgcctatttctttatagaagccactttgctttattattaaca |
36202941 |
T |
|
| Q |
312 |
ttttctttttctctaatggctcaagaggtaggaagcatactcaactttcttgagggcaagaccattttggttattggtgccactggttttcttgcaaaaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36202940 |
ttttctttttctctaatggctcaagaggtaggaagcatactcaactttcttgagggcaagaccattttggttattggtgccactggttttcttgcaaaaa |
36202841 |
T |
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| Q |
412 |
gtatgtatgctctccctttgtctccttc |
439 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
36202840 |
gtatgtatgctctccctttgtctccttc |
36202813 |
T |
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