View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_15 (Length: 387)
Name: NF20530_low_15
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 381
Target Start/End: Complemental strand, 24942805 - 24942424
Alignment:
| Q |
3 |
aatagaccaagttgctaccaaccatatgatatgaatttcttcgcattttttcctttcaccaacgtgcgttgaacgccaaaaagtcctacaccacttcaca |
102 |
Q |
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| T |
24942805 |
aatagaccaagttgctaccaaccatatgagatgaatttcttcacattttttcctttcaccaacgcgcgttgaacaccaaaaagttctacaccgcttcaca |
24942706 |
T |
|
| Q |
103 |
atccacacaccgggacgccattcctgtgacactctaatccnnnnnnnttacattcctttcaccaattcgtcgcatttctcgtttcttaagagaaattat- |
201 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24942705 |
atccacacactgggacgctattcctgtgacactctaatccaaaaaaattacattcctttcaccaattcgtcacatttctcgtttcttaagagaaattatt |
24942606 |
T |
|
| Q |
202 |
-tta-nnnnnnnggctttctaacctacaaacctgcaataaaaattttagtgttagaatcttctttagtcgcccacttctctctagacttttactttaata |
299 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||| || ||||| |
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| T |
24942605 |
attatttttttttactttctaacctacaaacctgcaataaaaaatttagtgttagaatctccttcagtcgcccacttctctctagaattttgctctaata |
24942506 |
T |
|
| Q |
300 |
aactatctttgttttagatgaaattcctaaaacgtttcttcacttccatccttcttgacttatcaattagaaacatcatctc |
381 |
Q |
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|||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24942505 |
aactatgtttgttctagatgaaattcctaaaactttccttcacttccatccttcttgacttatcaattagaaacatcatctc |
24942424 |
T |
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