View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_17 (Length: 375)
Name: NF20530_low_17
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 32689024 - 32689380
Alignment:
| Q |
8 |
agattattcttcgtggagcctgtcgaattctggaaatgtttgtctt--------cggtgaataaattcttaagcacggtctgccttcacatgcctctgcg |
99 |
Q |
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| T |
32689024 |
agattattcttcgtggagcctgttgaattctggaaatgtttgtcttcgactcttcggtgaataaattcttaagcacggtctgccttcacatgcctctgcg |
32689123 |
T |
|
| Q |
100 |
ccttatctatatctatgattcttctctatgtttgtggtctttgctctagattcatggttcatcattgttatgacttgattcgtgattgttcctttgtgag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32689124 |
ccttatctatatctatgattcttctctatgtttgtggtctctgctctagattcatggttcatcattgttatgacttgattcgtgattgttcctttgtgag |
32689223 |
T |
|
| Q |
200 |
ttgtgatcgtgatttgaagctttggtggaaaataattttcaatcatttatttagtggacctgaattaagggtactctggtaagaggttgttcatattgat |
299 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32689224 |
ttgtgatcgtgatttaaagctttggtggaaaataattttcaaccatttatttagtggacctgaattaagggtactctggtaagaggttgttc--attgat |
32689321 |
T |
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| Q |
300 |
gtgtcatgacagttagtattagttagaaaagagtagttgttatagtgttatgttataac |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32689322 |
gtgtcatgacagttagtattagttagaaaagagtagttgttatagtgttatgttataac |
32689380 |
T |
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