View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_19 (Length: 312)
Name: NF20530_low_19
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 47923463 - 47923748
Alignment:
| Q |
18 |
atgttaaattcatatattttgcactctttgtaaaatttaagagaagatgaattcatctctcctaaaatatgcttaaatgacatacatcatttttccaaga |
117 |
Q |
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| T |
47923463 |
atgttaaattcatatattttgcactctttgtaaaatttaagagaagatgaattcatctctcctaaaatatgcttaaatgacatacatcatttttccaaga |
47923562 |
T |
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| Q |
118 |
aactgcactcacacagtcgcatatgtttagaagaaatgtgtgtatgtaattgaagaaatgtcaatatttataaattatatagagatgtatgaatcatata |
217 |
Q |
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| T |
47923563 |
aactgcactcacacagtcgcatatgtttagaagaaatgtgtgtatgtaattgaagaaatgtcaatatttataaattatatagagatgtatgaatcatata |
47923662 |
T |
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| Q |
218 |
aaagttatgcctaacctgcaattttggctatggagagaccaacacctatggaagaataaccaaaagacatgactgcagcaagaata |
303 |
Q |
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| T |
47923663 |
aaagttatgcctaacctgcaattttggctatggagagaccaacacctatggaagaataaccaaaagacatgactgcagcaagaata |
47923748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 47917415 - 47917490
Alignment:
| Q |
228 |
ctaacctgcaattttggctatggagagaccaacacctatggaagaataaccaaaagacatgactgcagcaagaata |
303 |
Q |
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| T |
47917415 |
ctaacctgcaattttggctatggagagaccaatgcctatggaagcataaccaaaagacatgatggcagcaacaata |
47917490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 47909214 - 47909289
Alignment:
| Q |
228 |
ctaacctgcaattttggctatggagagaccaacacctatggaagaataaccaaaagacatgactgcagcaagaata |
303 |
Q |
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| T |
47909214 |
ctaacctgcaattttcgctatggagagaccaatgcctatggaagcataaccaaaagacatgatggcagcaacaata |
47909289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 47902534 - 47902610
Alignment:
| Q |
227 |
cctaacctgcaattttggctatggagagaccaacacctatggaagaataaccaaaagacatgactgcagcaagaata |
303 |
Q |
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| T |
47902534 |
cctaacctgcaacttttgcaatagagagaccgatgcctatggaagcataaccaaaagacatgacggcagcaagaata |
47902610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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