View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_2 (Length: 1003)
Name: NF20530_low_2
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_2 |
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| [»] scaffold0607 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 649; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 165 - 988
Target Start/End: Original strand, 21703747 - 21704571
Alignment:
| Q |
165 |
aaagctgaatgagtatcagagatgcattgtgacaaaatcaactttagtctatttgaaaggacctttgaaataaacttgtacaaaacattacacagagaaa |
264 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||| |
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| T |
21703747 |
aaagctgactgagtatcagagatgcattgtgacaaaatcaactttagtctatttgcaaggatctttgaaatcaacttgtacaaaacattacatagagaaa |
21703846 |
T |
|
| Q |
265 |
ttggacaccaatccttcattgttgtctgaatattttctttaggaataagagtggtgtctgtcatatatagatcagcgggaaactaacccgtatccaacca |
364 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
21703847 |
ttggacaccaatccttcattgttgtctgaatatttcctttaggaataagagcgatgtttgtcatatatagatcaacgggaaactgacccgtatccaacca |
21703946 |
T |
|
| Q |
365 |
acgataacattcagaaaaaatattatcgccacacaattcccaaaaatgctgatagaaaccggggttaaaaccatcttcccttggacacttgtcaagatgg |
464 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
21703947 |
acgacaacattcagaaaaaatattatcgccacacaattcctaaaaatgctgatagaaaccggggttaaaaccatctgcccttggacacttgtcaggatgc |
21704046 |
T |
|
| Q |
465 |
atagagaacattgcagttttaaattcatcctttgtgaaaggcttagtgagggaaatattatcttcgtgagacactaatgtgtgaataacatctatgacag |
564 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || |
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| T |
21704047 |
atacagaacattgcagttttaaattcatcctttgtgaaaggcttagtgagggaaatattatcttcgtgagacattgatgtgtgaataacatctatgatag |
21704146 |
T |
|
| Q |
565 |
gggccgaagagttgtgttgattttggaataaatttttaaataagattttgcaatggagcgcataccttgatcatctgtatgtttattaccgaaatcatct |
664 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
21704147 |
gggccgaagagttgtgttgtttttggaataaattattaaataagattttgcaatggagcgcataccttgatcatctgtatgtttattgccgaaatcattt |
21704246 |
T |
|
| Q |
665 |
tcaagagatgtgatacgatttaccttcctctaagttgactccaccgcgtgaaaaaactttgtatttcggtcaccatccttataccagcgtgcctttgctc |
764 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
21704247 |
tcaagagatgtgatacgatttaccttccttcgagttgactccaccgcgtgaaaatactttgtatttaggtcaccatccttataccagtgtgcctttgctc |
21704346 |
T |
|
| Q |
765 |
attgtctccaataagcatcatcctaaaccagcaacctatgcatgcgcttgtgtaacagtgacaacaacttttgctcatcaccagtgcggctaatgcgtgc |
864 |
Q |
| |
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|||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |
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| T |
21704347 |
attgtctccaataagcatcatcttgagccagcaacctatgcatgcgcttgtgtaacagtgccaactgcttttgctcatcaccagtgcgactaatgcgtgc |
21704446 |
T |
|
| Q |
865 |
aagatttaattcacgacgacattcctcaatttcaattttcagcttattacaatgatttctactccacactaccatctcctcagcagaacgt-tgttgacg |
963 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
21704447 |
aagattcaattcacgacgacattcctcaatttcaattttccgcttattacaatgatttctactccacactaccatctccccagcagaacgtcttttgacg |
21704546 |
T |
|
| Q |
964 |
tgggaggatatcatcttctgaagtg |
988 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
21704547 |
cgggaggatatcatcttctgaagtg |
21704571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 21701397 - 21701225
Alignment:
| Q |
1 |
aaggtgatcctctaccccctcacctgtttattattggtgcagaaggtctatcagctcttattcgagatgcggaggagcgccaaattattataggtacctc |
100 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||| ||||||||| |
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| T |
21701397 |
aaggtgatcctctatccccttacctgtttattattggtgcagaaggtctatcacctcttattcgagatgcagtggagcaacaaattattacaggtacctc |
21701298 |
T |
|
| Q |
101 |
tatttgtcgcggtgcaccttctatttctcatcttctatttgcagatgattgttttatgttttttaaagctgaa |
173 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21701297 |
tatttgtcgcggtgcaccttctgtttctcatcttctatttgcagatgattgttttctgttttttaaagctgaa |
21701225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 11606720 - 11606781
Alignment:
| Q |
222 |
aggacctttgaaataaacttgtacaaaacattacacagagaaattggacaccaatccttcat |
283 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||| || | |||||| | |||||||||||| |
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| T |
11606720 |
aggacctttgaaataagcttatacaaaacattacatagcgcaattggtctccaatccttcat |
11606781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 713 - 963
Target Start/End: Complemental strand, 18207460 - 18207210
Alignment:
| Q |
713 |
tgaaaaaactttgtatttcggtcaccatccttataccagcgtgcctttgctcattgtctccaataagcatcatcctaaaccagcaacctatgcatgcgct |
812 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||| | ||| |||||||| |||||||||||| |||||||||| ||| |||||||| ||| || | |
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| T |
18207460 |
tgaaagaacttagtatttctgtcaccatccttatactaatgtgtctttgctcgttgtctccaatatgcatcatcctgtgccaacaacctattcatacgtt |
18207361 |
T |
|
| Q |
813 |
tgtgtaacagtgacaacaacttttgctcatcaccagtgcggctaatgcgtgcaagatttaattcacgacgacattcctcaatttcaattttcagcttatt |
912 |
Q |
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||||||| | || | ||||| |||| |||| |||| |||||||||||||||||| ||| |||||||| || ||||||| ||||| || || |
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| T |
18207360 |
tgtgtaagactgttagttgaagctgctcttcactggtgcagctactgcgtgcaagatttaatttacggcgacattcttctatttcaagtttcaatttttt |
18207261 |
T |
|
| Q |
913 |
acaatgatttctactccacactaccatctcctcagcagaacgttgttgacg |
963 |
Q |
| |
|
||||| || | |||||||| ||||||||||||| ||| |||| |||||||| |
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| T |
18207260 |
acaattatgtttactccactctaccatctcctctgcacaacgatgttgacg |
18207210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 10396085 - 10396026
Alignment:
| Q |
113 |
tgcaccttctatttctcatcttctatttgcagatgattgttttatgttttttaaagctga |
172 |
Q |
| |
|
||||||| |||||||||| || |||||||||||||| |||||| ||||||| | |||||| |
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|
| T |
10396085 |
tgcacctactatttctcacctcctatttgcagatgactgttttttgtttttcagagctga |
10396026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 46093225 - 46093263
Alignment:
| Q |
402 |
tcccaaaaatgctgatagaaaccggggttaaaaccatct |
440 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||| |
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| T |
46093225 |
tcccaaaaatgttgatagaaacctgggttaaaaccatct |
46093263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 748
Target Start/End: Complemental strand, 8563105 - 8563070
Alignment:
| Q |
713 |
tgaaaaaactttgtatttcggtcaccatccttatac |
748 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
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| T |
8563105 |
tgaaaaaactttgtatttctgtcaccatccttatac |
8563070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 31158962 - 31159011
Alignment:
| Q |
124 |
tttctcatcttctatttgcagatgattgttttatgttttttaaagctgaa |
173 |
Q |
| |
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||||||||||||||||||| || ||||||||| | ||||| ||||||||| |
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| T |
31158962 |
tttctcatcttctatttgcggacgattgttttctttttttcaaagctgaa |
31159011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 214 - 176
Alignment:
| Q |
402 |
tcccaaaaatgctgatagaaaccggggttaaaaccatct |
440 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
214 |
tcccaaaaatgttgatagaaacctgggttaaaaccatct |
176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 6152 - 6114
Alignment:
| Q |
402 |
tcccaaaaatgctgatagaaaccggggttaaaaccatct |
440 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |
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| T |
6152 |
tcccaaaaatgttgatagaaacctgggttaaaaccatct |
6114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 713 - 751
Target Start/End: Complemental strand, 25101769 - 25101731
Alignment:
| Q |
713 |
tgaaaaaactttgtatttcggtcaccatccttataccag |
751 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| |
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| T |
25101769 |
tgaaaaaactttgtatttctgtcgccatccttataccag |
25101731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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