View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_20 (Length: 312)
Name: NF20530_low_20
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 9309363 - 9309641
Alignment:
| Q |
20 |
ctacagaggagaaattagctggagctttttctcaatacggaaatgttgtcaaaggtagatgtttatattgtcgtcacaagcccaaaacctctcagattaa |
119 |
Q |
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| T |
9309363 |
ctacagaggagaaattagctgaagctttttctcaatacggaaatgttgtcaaaggtagatgtttatattgtcgtcacaagcccaaaacctctcagattaa |
9309462 |
T |
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| Q |
120 |
aacactcattcatgaatcatttcatttttccagctgatatagtattgaataaagccaagaaaagatgcaaaggttttggatatgtgacttttgctgagga |
219 |
Q |
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| T |
9309463 |
aacactcattcatgaatcatttcatttttccagctgatatagtattgaataaagccaagaaaagatgcaaaggttttggatatgtgacttttgctgagga |
9309562 |
T |
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| Q |
220 |
ggaagaagcccgcaaggcacaaattggcatgaatggaaaggttagaacctacaaacctaaagtatccaaacatagcctc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9309563 |
ggaagaagcccgcaaggcacaaattggcatgaatggaaaggttagaacctacaaacctaaagtatccaaacatagcctc |
9309641 |
T |
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