View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20530_low_22 (Length: 293)

Name: NF20530_low_22
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20530_low_22
NF20530_low_22
[»] chr4 (14 HSPs)
chr4 (15-160)||(46709131-46709276)
chr4 (161-278)||(40534110-40534227)
chr4 (161-278)||(3102687-3102804)
chr4 (161-238)||(9231580-9231657)
chr4 (159-238)||(3102538-3102617)
chr4 (187-278)||(9231727-9231818)
chr4 (162-238)||(13690216-13690292)
chr4 (159-238)||(40533961-40534040)
chr4 (159-252)||(37177799-37177892)
chr4 (158-230)||(5121002-5121074)
chr4 (159-238)||(18381496-18381575)
chr4 (160-227)||(11147013-11147080)
chr4 (158-224)||(18936673-18936738)
chr4 (160-252)||(18936850-18936942)
[»] chr2 (17 HSPs)
chr2 (159-278)||(31860232-31860351)
chr2 (161-278)||(42028578-42028695)
chr2 (159-266)||(13279994-13280101)
chr2 (158-275)||(7317785-7317902)
chr2 (161-266)||(16115046-16115151)
chr2 (160-275)||(2059634-2059749)
chr2 (161-238)||(42028765-42028842)
chr2 (159-238)||(7317633-7317712)
chr2 (159-234)||(36059278-36059353)
chr2 (161-227)||(31860079-31860145)
chr2 (161-238)||(16115231-16115308)
chr2 (159-238)||(15332849-15332928)
chr2 (161-238)||(2059490-2059567)
chr2 (161-222)||(13279840-13279901)
chr2 (162-230)||(3671822-3671889)
chr2 (161-253)||(31470587-31470678)
chr2 (161-230)||(31470773-31470841)
[»] chr5 (17 HSPs)
chr5 (161-278)||(791592-791709)
chr5 (159-278)||(26534645-26534764)
chr5 (161-278)||(130395-130512)
chr5 (163-260)||(8323873-8323970)
chr5 (159-277)||(42630855-42630973)
chr5 (161-238)||(26534506-26534583)
chr5 (160-238)||(130253-130331)
chr5 (161-238)||(8323707-8323784)
chr5 (161-238)||(42630711-42630788)
chr5 (161-253)||(33377820-33377912)
chr5 (159-253)||(5146675-5146769)
chr5 (161-253)||(13823320-13823412)
chr5 (159-238)||(35454637-35454715)
chr5 (161-218)||(791810-791867)
chr5 (161-222)||(6518203-6518264)
chr5 (159-252)||(8489121-8489214)
chr5 (159-227)||(14069859-14069926)
[»] chr1 (13 HSPs)
chr1 (161-278)||(10227712-10227829)
chr1 (161-278)||(26552139-26552256)
chr1 (169-266)||(19059537-19059634)
chr1 (159-230)||(10227907-10227978)
chr1 (165-238)||(19059378-19059451)
chr1 (158-252)||(28217692-28217786)
chr1 (161-253)||(50892963-50893055)
chr1 (160-252)||(23346418-23346510)
chr1 (163-238)||(26551992-26552067)
chr1 (161-252)||(48871410-48871501)
chr1 (161-227)||(41834074-41834139)
chr1 (199-252)||(7062045-7062098)
chr1 (161-230)||(48871247-48871315)
[»] chr8 (12 HSPs)
chr8 (161-278)||(37994855-37994972)
chr8 (161-238)||(37994708-37994785)
chr8 (161-253)||(2814416-2814508)
chr8 (160-252)||(41539769-41539861)
chr8 (159-238)||(44036812-44036891)
chr8 (159-252)||(14193322-14193414)
chr8 (177-265)||(25101746-25101834)
chr8 (158-253)||(397177-397272)
chr8 (159-233)||(41539963-41540036)
chr8 (217-266)||(44036973-44037022)
chr8 (159-238)||(2814241-2814319)
chr8 (161-240)||(14193510-14193588)
[»] chr3 (11 HSPs)
chr3 (160-275)||(33214442-33214557)
chr3 (161-266)||(27073067-27073172)
chr3 (168-266)||(36274126-36274224)
chr3 (160-238)||(33214626-33214704)
chr3 (163-238)||(10598810-10598885)
chr3 (161-224)||(33219072-33219135)
chr3 (159-238)||(36274312-36274391)
chr3 (161-253)||(36635410-36635502)
chr3 (159-258)||(19580477-19580576)
chr3 (160-222)||(27072912-27072974)
chr3 (232-278)||(33219219-33219265)
[»] chr6 (5 HSPs)
chr6 (162-275)||(33022318-33022431)
chr6 (160-238)||(33022163-33022241)
chr6 (162-238)||(7789857-7789933)
chr6 (161-253)||(21389021-21389113)
chr6 (159-227)||(21389220-21389287)
[»] scaffold0214 (2 HSPs)
scaffold0214 (165-260)||(11630-11725)
scaffold0214 (161-238)||(11814-11891)
[»] chr7 (8 HSPs)
chr7 (159-258)||(19805581-19805680)
chr7 (161-238)||(19804797-19804874)
chr7 (161-253)||(40521188-40521280)
chr7 (161-258)||(7298635-7298732)
chr7 (199-253)||(46568130-46568184)
chr7 (161-227)||(28949004-28949069)
chr7 (159-227)||(7298835-7298902)
chr7 (159-227)||(40521014-40521081)
[»] scaffold0135 (2 HSPs)
scaffold0135 (161-238)||(37446-37523)
scaffold0135 (187-278)||(37593-37684)
[»] scaffold0140 (1 HSPs)
scaffold0140 (160-227)||(15846-15913)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 46709276 - 46709131
Alignment:
Q  15 aatgaagatgggtatgtttgagttcaatgcaacgtgcttatctctcaactttgaatgttgctagttgacaattctatggagagtattattctagccacca 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709276 aatgaagatgggtatggttgagttcaatgcaacgtgcttatctctcaactttgaatgttgctagttgacaattctatggagagtattattctagccacca 46709177  T
Q  115 tatgaattattccttgattctaaaacctaaactgtggtgtccgtaa 160  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  46709176 tatgaattattccttgattctaaaacctaaaccgtggtgtccgtaa 46709131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 40534227 - 40534110
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 40534128  T
Q  261 ttaaatgagctagtcctt 278  Q
    |||||| | |||||||||    
T  40534127 ttaaatcaactagtcctt 40534110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 3102804 - 3102687
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||||| |||||||||| | | |||||||||||||||||    
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttttttaaaataattataaaaaa 3102705  T
Q  261 ttaaatgagctagtcctt 278  Q
    |||||| | |||||||||    
T  3102704 ttaaatcaactagtcctt 3102687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 9231580 - 9231657
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| |||||||||||||| | || ||||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  9231580 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 9231657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 3102538 - 3102617
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||||| |||||||||||||| | |||||||  ||||||||||||||| ||||||||||||| || ||||||||||    
T  3102538 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 9231818 - 9231727
Alignment:
Q  187 taacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaattaaatgagctagtcctt 278  Q
    |||||||  ||||||||||||||| ||||||||||||  || |||||||||||| | ||||||||||||||||| ||||| | |||||||||    
T  9231818 taacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtcctt 9231727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 13690216 - 13690292
Alignment:
Q  162 agaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    ||||||| |||||||||||||| | |||||||  ||||||||||||||| ||||||||||||| || ||||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13690292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 40533961 - 40534040
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||||| |||||||||||||| | |||||||  || |||||||||||| ||||||||||||| || ||||||||||    
T  40533961 aagagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttt 40534040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 37177892 - 37177799
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatt 252  Q
    |||||||||| |||| ||||||||| |||||| ||  || |||||||||||| ||||||||||||| || || ||||||| | | |||||||||    
T  37177892 aagagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatt 37177799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 5121074 - 5121002
Alignment:
Q  158 taagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatc 230  Q
    ||||||||||| |||||||||||| | | |||| ||  || |||||||||||| |||||||||||||||||||    
T  5121074 taagagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacacatc 5121002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 18381575 - 18381496
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||||| |||||||||||||| | |||| |   || ||||||| |||| ||||||||||||||||||| |||||||    
T  18381575 aagagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgtttt 18381496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 11147013 - 11147080
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacac 227  Q
    ||||||||| |||||||||||||| | |||  ||  || |||||||||||| ||||||||||||||||    
T  11147013 agagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacac 11147080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 18936673 - 18936738
Alignment:
Q  158 taagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatga 224  Q
    ||||||||||| ||||||| |||||| |||||| ||  || |||||||||||| |||||||||||||    
T  18936673 taagagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatga 18936738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 18936942 - 18936850
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatt 252  Q
    ||||||||| |||| ||||||||| | |||  ||  || |||||||||||  |||||||||||||||| || ||||||| | | |||||||||    
T  18936942 agagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 18936850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 31860351 - 31860232
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaa 258  Q
    |||||||||| |||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||    
T  31860351 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgttttcttttaaaataattataaaa 31860252  T
Q  259 aattaaatgagctagtcctt 278  Q
    || ||||| | |||||||||    
T  31860251 aaataaattaactagtcctt 31860232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 42028578 - 42028695
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||||| |||||||||||||| | |||||||  || |||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||    
T  42028578 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 42028677  T
Q  261 ttaaatgagctagtcctt 278  Q
    |||||| | |||||||||    
T  42028678 ttaaatcaactagtcctt 42028695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 13280101 - 13279994
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaa 258  Q
    |||||||||| |||||||||||||| | |||||||  ||||||||||||||| ||||||||||||| || |||||||||||| | |||||||||||||||    
T  13280101 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttttcttttaaaataattataaaa 13280002  T
Q  259 aattaaat 266  Q
    || |||||    
T  13280001 aaataaat 13279994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 7317902 - 7317785
Alignment:
Q  158 taagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaa 257  Q
    ||||||||||| |||||||||||||| | |||||||  ||||||||||||||  |||||||||||||||||| ||| |||||| | ||||||||||||||    
T  7317902 taagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacattgtttttttcttttaaaataattataaa 7317803  T
Q  258 aaattaaatgagctagtc 275  Q
    ||| ||||| | ||||||    
T  7317802 aaaataaatcaactagtc 7317785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 16115046 - 16115151
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||||||||||||| |||||| | |||||||  ||||||||||||||| |||||||| ||||||| |||||||||||| | |||||||||||||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaa 16115145  T
Q  261 ttaaat 266  Q
     |||||    
T  16115146 ataaat 16115151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 2059749 - 2059634
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaa 259  Q
    ||||||||| |||||| ||||||| | |||||||  ||||||||||||||| |||||||| ||||||| |||||||||||| | ||||||||||||||||    
T  2059749 agagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaa 2059650  T
Q  260 attaaatgagctagtc 275  Q
    | ||||| | ||||||    
T  2059649 aataaatcaactagtc 2059634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 42028842 - 42028765
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| |||||||||||||| | |||||||  ||||||||||||||| ||||||||||||| || ||||||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 42028765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 7317633 - 7317712
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| |||||||||||||||| | |||||||  |||||||| |||||| || ||||||||||||| ||||||||||    
T  7317633 aagagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttt 7317712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 36059353 - 36059278
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttg 234  Q
    |||||||||| |||||||||||||| | |||| ||  ||||||||||||||| |||||||||||||||| ||||||    
T  36059353 aagagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttg 36059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 31860079 - 31860145
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacac 227  Q
    |||||||| |||||||||||||| | |||||||  ||||||| ||||||| ||||||||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacac 31860145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 16115308 - 16115231
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    ||||||||||||||||||||||| | |||||||  || |||||||||||| || ||||| ||||||| || |||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttt 16115231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 15332928 - 15332849
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||||| |||||||||||||| | |||| ||  || |||||||||||  |||||||||||||||| || |||||||    
T  15332928 aagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 15332849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 2059490 - 2059567
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| ||| |||||||||| | |||||||  ||||||||||||||| || ||||| ||||||| || |||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttt 2059567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 13279840 - 13279901
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacat 222  Q
    |||||||| |||||||||||||| | ||| |||  ||||||||||||||| |||||||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 3671822 - 3671889
Alignment:
Q  162 agaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatc 230  Q
    ||||||| |||||||||||||| | |||| ||  || |||||||||||| |||||||||||||||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacatc 3671889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 31470587 - 31470678
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    |||||||| |||||||||||||| | |||| ||  ||  ||||||||||| |||||||||||||||| || ||||||| | | ||||||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 31470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 31470841 - 31470773
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatc 230  Q
    ||||||||||||||||||||||| | ||| |||  || |||||||||||| |||||||  ||||||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaataatgacacatc 31470773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 791592 - 791709
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 791691  T
Q  261 ttaaatgagctagtcctt 278  Q
     ||||| | |||||||||    
T  791692 ataaattaactagtcctt 791709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 26534764 - 26534645
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaa 258  Q
    |||||||||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||    
T  26534764 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaa 26534665  T
Q  259 aattaaatgagctagtcctt 278  Q
    || ||||| | |||||||||    
T  26534664 aaataaatcaactagtcctt 26534645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 130512 - 130395
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||||| || ||||| ||||| | |||||||  ||||||||||||||| ||||||||||| |||| |||||||||||| | |||||||||||||||||    
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgttttcttttaaaataattataaaaaa 130413  T
Q  261 ttaaatgagctagtcctt 278  Q
     ||||| | |||||||||    
T  130412 ataaatcaactagtcctt 130395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 8323970 - 8323873
Alignment:
Q  163 gaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||| |||||||||||||| | |||| ||  ||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 8323873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 42630973 - 42630855
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaa 258  Q
    |||| ||||| ||||||||| |||| | |||||||  ||||||||||||||  |||||||| ||||||| |||||||||||| | |||||||||||||||    
T  42630973 aagaaaaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgttttcttttaaaataattataaaa 42630874  T
Q  259 aattaaatgagctagtcct 277  Q
    || | ||| | ||||||||    
T  42630873 aaatgaatcaactagtcct 42630855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 26534506 - 26534583
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| |||||||||||||| | |||||||  | ||||||||||||| |||||||||||||||| ||||||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 130253 - 130331
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    ||||||||| |||||||||||||| | ||||||   | ||||||||||||| |||||||||||||||| ||||||||||    
T  130253 agagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 130331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 8323707 - 8323784
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| |||||||||||||| | |||||||  ||| ||||||||||  |||||||||||||||| ||||||||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttt 8323784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 42630711 - 42630788
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| ||||||| |||||| | |||||||  ||||||||||||||| || ||||||||||||| || |||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttt 42630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 33377912 - 33377820
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    |||||||| || ||||||||||| | |||| ||  || |||||||||||| |||||||||||||||| || ||||||| | | ||||||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 33377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 5146769 - 5146675
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    |||||||||| |||||||| ||||| | |||  ||  || |||||||||||| |||||||||||||||| || ||||||| | | ||||||||||    
T  5146769 aagagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 5146675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 13823412 - 13823320
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    |||||||| |||||||||||||| | |||| ||  ||  ||||||| ||| |||||||||||||||| || ||||||| | | ||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgttttattttaaaataatta 13823320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 35454715 - 35454637
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||| ||||| |||||||||||||| | |||| ||  || |||||||||||| |||||||||||||||| || |||||||    
T  35454715 aagaaaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 35454637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 791867 - 791810
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaa 218  Q
    |||||||| |||||||||||||| | |||||||  ||| ||||||||||| |||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 6518203 - 6518264
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacat 222  Q
    |||||||| |||||||||||||| | |||| ||  || |||||||||||| |||||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 6518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 8489121 - 8489214
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatt 252  Q
    |||||||||| |||||||||||| |   |||| ||  || |||||||||||| |||||||| ||||||| || ||||||| | | |||||||||    
T  8489121 aagagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgttttattttaaaataatt 8489214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 14069859 - 14069926
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacac 227  Q
    |||||||||| |||||||||||||| | ||| |||  || |||| ||||||| ||||||||||||||||    
T  14069859 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttataaacaacaaattaaaacatgacac 14069926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 10227712 - 10227829
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||||| |||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||    
T  10227712 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 10227811  T
Q  261 ttaaatgagctagtcctt 278  Q
     ||||| | |||||||||    
T  10227812 ataaattaactagtcctt 10227829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 26552256 - 26552139
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||||| |||||||||| ||| | |||||||  ||||||||||||||| |||||||| ||||||| |||||||||||| | |||||||||||||||||    
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaa 26552157  T
Q  261 ttaaatgagctagtcctt 278  Q
     ||||| | |||||||||    
T  26552156 ataaatcaactagtcctt 26552139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 19059634 - 19059537
Alignment:
Q  169 tttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaattaaat 266  Q
    ||||||||||||||| | |||||||  ||||||| ||| ||| |||||||| |||||||||||||||||||| | ||||||||||||||||| |||||    
T  19059634 tttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgttttcttttaaaataattataaaaaaataaat 19059537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 10227978 - 10227907
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatc 230  Q
    |||||||||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||||||||    
T  10227978 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacatc 10227907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 19059378 - 19059451
Alignment:
Q  165 aatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||||| ||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 19059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 28217786 - 28217692
Alignment:
Q  158 taagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatt 252  Q
    ||||||||||| |||||||||||||| | |||| ||  || |||||||||||| ||| ||||||||||||||| ||||||| | | |||||||||    
T  28217786 taagagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgttttattttaaaataatt 28217692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 50892963 - 50893055
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    ||||||||||||||||| ||||| | |||| ||  || |||||||||||| |||||||||||||||| || ||||||| | | ||||||||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 50893055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 23346418 - 23346510
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatt 252  Q
    ||||||||| |||||||||||||| | |||| ||  || |||||||||||  |||||||||||||||| || || |||| | | |||||||||    
T  23346418 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatttttttattttaaaataatt 23346510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 26551992 - 26552067
Alignment:
Q  163 gaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||| ||||||||||||||   |||||||  ||||||||||||||  |||||||| ||| ||| ||||||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttt 26552067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 48871501 - 48871410
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatt 252  Q
    |||||||| |||||||||||||| | |||| ||  || |||||||||||| |||||||||||  ||| || ||||||| | | |||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgttttattttaaaataatt 48871410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 41834139 - 41834074
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacac 227  Q
    |||||||| |||||||||||||| |||||| ||  ||  ||||||||||| ||||||||||||||||    
T  41834139 gagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacac 41834074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 7062045 - 7062098
Alignment:
Q  199 cttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatt 252  Q
    |||||||||||| |||||||||||||||| || ||||||| | | |||||||||    
T  7062045 cttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatt 7062098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 48871247 - 48871315
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatc 230  Q
    |||||||| |||||||||||||| | |||| ||  || |||||||| ||| |||||||||||||||||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacacatc 48871315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 37994972 - 37994855
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||||| |||||||||||||| | |||||||  ||||||||||||||  |||||||||||||||| |||||||||||| | |||||||||||||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 37994873  T
Q  261 ttaaatgagctagtcctt 278  Q
    |||||| | |||||||||    
T  37994872 ttaaatcaactagtcctt 37994855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 37994708 - 37994785
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| |||||||||||||| | |||||||  ||||||||||||||  ||||||||||||| || ||||||||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttt 37994785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 2814508 - 2814416
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    |||||||| |||||||||||||| | |||| ||  || |||||||||||| |||||||||||||||| || ||||||| | | ||||||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttttttaaaaataatta 2814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 41539769 - 41539861
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatt 252  Q
    ||||||||| |||||||||||||| | |||| ||  || |||||||||||| |||||||| ||||||| |||||||||| | | |||||||||    
T  41539769 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgttttattttaaaataatt 41539861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 44036812 - 44036891
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    ||||||||||  |||||||| |||| | |||||||  ||||||||||||||| |||| ||||||||||| ||||||||||    
T  44036812 aagagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttt 44036891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 14193322 - 14193414
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatt 252  Q
    ||||||||||||||| ||||||||| | |||| ||  ||  ||||||||||| ||||||||||||||||||| ||||||| | | |||||||||    
T  14193322 aagagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatt 14193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 25101746 - 25101834
Alignment:
Q  177 ggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaattaaa 265  Q
    ||||||| | |||||||  || ||| |||||||| || ||||| ||||||||| |||||||||| | ||||||||||||||||| ||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacacattgttgttttcttttaaaataattataaaaaaataaa 25101834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 397272 - 397177
Alignment:
Q  158 taagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    ||||||||||| |||||||| ||||| | |||| ||  || |||| ||||||| |||||||||||||||| || ||||||| | | ||||||||||    
T  397272 taagagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 397177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 41540036 - 41539963
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgtt 233  Q
    |||||||||| |||||||||||||| | |||| ||  || |||||||||||| |||||||||||||||| |||||    
T  41540036 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 41539963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 44037022 - 44036973
Alignment:
Q  217 aaacatgacacatcgttgttttctgtgaaaataattataaaaaattaaat 266  Q
    ||||||||||| |||||||||||| | ||||||||||||||||| |||||    
T  44037022 aaacatgacacgtcgttgttttcttttaaaataattataaaaaaataaat 44036973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 2814241 - 2814319
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||||| |||||||||||||| | |||| ||  || |||||||||||| ||||||| |||||||| ||||| ||||    
T  2814241 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtcgttttttt 2814319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 14193588 - 14193510
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttct 240  Q
    |||||||| |||||||||||||| | |||| ||  || |||||||||||| |||||||||||||||| || || ||||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttct 14193510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 33214442 - 33214557
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaa 259  Q
    ||||||||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||    
T  33214442 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaa 33214541  T
Q  260 attaaatgagctagtc 275  Q
    | ||||| | ||||||    
T  33214542 aataaatcaactagtc 33214557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 27073172 - 27073067
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||||||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 27073073  T
Q  261 ttaaat 266  Q
     |||||    
T  27073072 ataaat 27073067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 36274126 - 36274224
Alignment:
Q  168 ttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaattaaat 266  Q
    |||||||||||||||| | |||| ||  ||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||| |||||    
T  36274126 ttttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaataaat 36274224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 33214704 - 33214626
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    ||||||||| |||||||||||||| | |||||||  | ||||||||||||| |||||||||||||||| ||||||||||    
T  33214704 agagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 10598810 - 10598885
Alignment:
Q  163 gaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||| |||||||||||||| | |||||||  ||| ||||||||||| |||||||||||||||| ||||||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 10598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 33219072 - 33219135
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatga 224  Q
    |||||||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 33219135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 36274391 - 36274312
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||||| || |||||||||||   |||||||  ||| ||||||||||| |||||||||||||||| ||||||||||    
T  36274391 aagagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 36635502 - 36635410
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    |||||||| |||||||||||||| | |||| ||  ||  ||||||||||| |||||||||||||||| || ||||||| | | ||||||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 36635410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 19580576 - 19580477
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaa 258  Q
    |||||||||| |||| ||||||||| | |||| ||  || |||||||||||| |||||||||||||||  || ||||||| | | ||||||||| |||||    
T  19580576 aagagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataattttaaaa 19580477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 27072912 - 27072974
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacat 222  Q
    ||||||||| |||||||||||||| | ||| |||  ||||||||||||||| |||||||||||    
T  27072912 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 33219265 - 33219219
Alignment:
Q  232 ttgttttctgtgaaaataattataaaaaattaaatgagctagtcctt 278  Q
    ||||||||| | ||||||||||||||||||||||| | |||||||||    
T  33219265 ttgttttcttttaaaataattataaaaaattaaatcaactagtcctt 33219219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 33022431 - 33022318
Alignment:
Q  162 agaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaat 261  Q
    ||||||| |||||||||||||| | |||| ||  ||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||     
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaa 33022332  T
Q  262 taaatgagctagtc 275  Q
    ||||| | ||||||    
T  33022331 taaatcaactagtc 33022318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 33022163 - 33022241
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    ||||||||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||||| ||||||||||    
T  33022163 agagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 7789933 - 7789857
Alignment:
Q  162 agaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    ||||||| ||||||||||| || | |||| ||  || |||||||||||| |||||||||||||||| || |||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 7789857  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 21389021 - 21389113
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    |||||||| || ||||||||||| | |||| ||  || |||||||||||| ||||||||||||| || || ||||||| | | ||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatta 21389113  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 21389287 - 21389220
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacac 227  Q
    |||| ||||| |||||||||||||| | |||| ||  || |||||||||||| ||||||||||||||||    
T  21389287 aagataaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacac 21389220  T

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Target: scaffold0214 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 11630 - 11725
Alignment:
Q  165 aatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaa 260  Q
    |||| |||||||||||||| | |||||||  ||||||||||||||| |||||||| |||||||||| ||||||||| | |||||||||||||||||    
T  11630 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgttttcttttaaaataattataaaaaa 11725  T

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Target: scaffold0214; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 11891 - 11814
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| |||||||||||||| | |||||||  ||||||||||||||| |||||||||||||||| ||||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 11814  T

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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 19805680 - 19805581
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaa 258  Q
    |||||||||| |||||||||||||| | |||||||  ||||||| ||| ||| |||||||||||||||| |||||| ||||| | |||||||||||||||    
T  19805680 aagagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcgttgctttcttttaaaataattataaaa 19805581  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 19804797 - 19804874
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| |||||||||||||| | |||||||  ||||||||||||||| |||| ||||| ||||||||||||||||    
T  19804797 gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttt 19804874  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 40521280 - 40521188
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    |||||||| |||||||||||||| | |||| ||  || |||||||||||| ||||||||||||||||||| ||||||| | | ||||||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatta 40521188  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 258
Target Start/End: Original strand, 7298635 - 7298732
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaa 258  Q
    |||||||| |||||||||||||| | |||| ||  ||  ||||||||||| |||||||||||||||| || ||||||| | | |||||||||| ||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataattagaaaa 7298732  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 46568184 - 46568130
Alignment:
Q  199 cttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataatta 253  Q
    |||||||||||| ||||||||||||||||||| ||||||| | | ||||||||||    
T  46568184 cttacaaacaacaaattaaaacatgacacatcattgttttatttaaaaataatta 46568130  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 28949069 - 28949004
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacac 227  Q
    ||||||||||||||||||||||| | ||| |||  || |||||||||||  ||||||||||||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacatgacac 28949004  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 7298902 - 7298835
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacac 227  Q
    |||||||||| |||||||||||||| | |||| ||  || |||||||||||| ||||||||||| ||||    
T  7298902 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacac 7298835  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 40521014 - 40521081
Alignment:
Q  159 aagagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacac 227  Q
    |||||||||| |||||||||||||| | ||| |||  || |||||||||||| |||||||| |||||||    
T  40521014 aagagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaatatgacac 40521081  T

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Target: scaffold0135 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 37446 - 37523
Alignment:
Q  161 gagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacacatcgttgtttt 238  Q
    |||||||| |||||||||||||| | || ||||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  37446 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 37523  T

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Target: scaffold0135; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 37684 - 37593
Alignment:
Q  187 taacctacaatccttacaaacaactaattaaaacatgacacatcgttgttttctgtgaaaataattataaaaaattaaatgagctagtcctt 278  Q
    |||||||  ||||||||||||||| ||||||||||||  || |||||||||||| | ||||||||||||||||| ||||| | |||||||||    
T  37684 taacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtcctt 37593  T

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Target: scaffold0140 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 15846 - 15913
Alignment:
Q  160 agagaaatttttgtgtaggaacgatcataacctacaatccttacaaacaactaattaaaacatgacac 227  Q
    ||||||||| |||||||||||||| | |||| ||  || |||||||||||| ||||||||||||||||    
T  15846 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 15913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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