View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_24 (Length: 269)
Name: NF20530_low_24
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_24 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 40095058 - 40094803
Alignment:
| Q |
10 |
taaattattctaattgaagaaaaataaattgggatgttcctagaatacaattctaatttggaaagggaagaagaatttaagataagagttgaacacaatt |
109 |
Q |
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| T |
40095058 |
taaactattctaattgaagaaaaataaattgggatgttcctagaatacaattctaatttggaaagggaagaagaatttaagataagagttgaagacaatt |
40094959 |
T |
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| Q |
110 |
gatgactgctcttggttggagcaacatgttacatgtttgtctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaa |
209 |
Q |
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| T |
40094958 |
gatgactgctcttgg----agcaacatgttacatgtttgtctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaa |
40094863 |
T |
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| Q |
210 |
tgtatcagttgatactccaatactacaacttcttgatccaatgcaggcctgttaataaga |
269 |
Q |
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| T |
40094862 |
tgtatcggttgatactccaatactacaacttcttgatccaatgcaggcctgttaataaga |
40094803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 40082814 - 40082564
Alignment:
| Q |
15 |
tattctaattgaagaaaaataaattgggatgttcctagaatacaattctaatttggaaagggaagaagaatttaagataagagttgaacacaattgatga |
114 |
Q |
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| T |
40082814 |
tattctaagtgaaaaataaaaaattgggatgttcctagaatacaattctaatttagatagggaagatgaattgaagataagagttgaacacaattgagga |
40082715 |
T |
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| Q |
115 |
ctgctcttggttggagcaacatgttacatgtttgtctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtat |
214 |
Q |
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| T |
40082714 |
ctgctcttag----agcaacatgttacatgtttgtctatgcacaagtagcttcaacagctaaacttttcggtactcctctacaagggtctccaaatgtat |
40082619 |
T |
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| Q |
215 |
cagttgatactccaatactacaacttcttgatccaatgcaggcctgttaataaga |
269 |
Q |
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| T |
40082618 |
cagttgatactccaacactacaacttcttgatccaatgcaggcctgttaataaga |
40082564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 154 - 269
Target Start/End: Complemental strand, 40063989 - 40063874
Alignment:
| Q |
154 |
gcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtatcagttgatactccaatactacaacttcttgatccaatgc |
253 |
Q |
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| T |
40063989 |
gcacaagtagcttcaacagctaaactctttggcactcctctacaagggtctccaaatgtatcggttgatactccaatactacaacttcttgatccaatgc |
40063890 |
T |
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| Q |
254 |
aggcctgttaataaga |
269 |
Q |
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| T |
40063889 |
aggcctgttaataaga |
40063874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 22011868 - 22011979
Alignment:
| Q |
150 |
ctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtatcagttgatactccaatactacaacttcttgatcca |
249 |
Q |
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| T |
22011868 |
ctatgtacaagcagcttcaacagctaagctctttgttactcctcggcatggatttccaaatgtattaattgatactccaatattacaactgctcgatcca |
22011967 |
T |
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| Q |
250 |
atgcaggcctgt |
261 |
Q |
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| T |
22011968 |
atgcaggcctgt |
22011979 |
T |
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