View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20530_low_26 (Length: 250)

Name: NF20530_low_26
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20530_low_26
NF20530_low_26
[»] chr2 (5 HSPs)
chr2 (1-233)||(40094505-40094737)
chr2 (3-80)||(15091280-15091357)
chr2 (1-83)||(40082402-40082483)
chr2 (58-103)||(13986642-13986687)
chr2 (58-103)||(13992540-13992585)
[»] chr7 (1 HSPs)
chr7 (3-87)||(39535438-39535522)
[»] chr3 (1 HSPs)
chr3 (6-88)||(35194969-35195051)
[»] chr8 (3 HSPs)
chr8 (6-75)||(9438188-9438257)
chr8 (3-48)||(30524191-30524236)
chr8 (6-50)||(7326607-7326651)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 40094737 - 40094505
Alignment:
Q  1 ccgtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctccacttctcagtatataatgtgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40094737 ccgtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctccacttctcagtacataatgtgt 40094638  T
Q  101 gtgtgagtttcgccactaaccagcttaaaaccaacagcaacaacnnnnnnncaagatttgatcgtggagttcggccaattgtgtatacatctacggcagc 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40094637 gtgtgagtttcgccgctaaccagcttaaaaccaacagcaacaacaaaaaaacaagatttgatcgcggagttcggccaattgtgtatacatctacggcagc 40094538  T
Q  201 aaagaggttacatattactgcttgtgtttaaat 233  Q
    ||||||||||||||||||| | |||||||||||    
T  40094537 aaagaggttacatattactacctgtgtttaaat 40094505  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 15091280 - 15091357
Alignment:
Q  3 gtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctcca 80  Q
    |||| |||| ||||||||||||||| |||||  |||||||||||||||||  ||   |||||||| ||||||||||||    
T  15091280 gtaaatacatctcagatggtaaaatattgcaaagacatttgatatgttggggcgtgagtttgaactcacaattctcca 15091357  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 40082483 - 40082402
Alignment:
Q  1 ccgtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctccactt 83  Q
    |||||||||||||||| |||||||||   ||  || |||||||||||||| || | | |||| ||||||||||||||||||||    
T  40082483 ccgtaagtacaactcatatggtaaaaggatgtgggaacatttgatatgttagagctcgggtt-gaacccacaattctccactt 40082402  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 13986687 - 13986642
Alignment:
Q  58 aggtttgaacccacaattctccacttctcagtatataatgtgtgtg 103  Q
    ||||||||| |||||||| |||||||||||| || |||||||||||    
T  13986687 aggtttgaatccacaattatccacttctcagcatttaatgtgtgtg 13986642  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 13992585 - 13992540
Alignment:
Q  58 aggtttgaacccacaattctccacttctcagtatataatgtgtgtg 103  Q
    ||||||||| |||||||| |||||||||||| || |||||||||||    
T  13992585 aggtttgaatccacaattatccacttctcagcatttaatgtgtgtg 13992540  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 39535522 - 39535438
Alignment:
Q  3 gtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctccacttctca 87  Q
    |||||||||||||| |||||||||| ||||| | | |||||||||||||| | ||||||| | |||  ||||||||||| |||||    
T  39535522 gtaagtacaactcaaatggtaaaatgttgcatgaatatttgatatgttgggatgcaggttcggacctgcaattctccacgtctca 39535438  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 35195051 - 35194969
Alignment:
Q  6 agtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctccacttctcag 88  Q
    |||| ||||||||||||||| | ||||| | ||||||||||||||||   |  |||||||||||  |||||||||||||||||    
T  35195051 agtataactcagatggtaaattgttgcatgaacatttgatatgttggggtgagggtttgaacccgtaattctccacttctcag 35194969  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 9438257 - 9438188
Alignment:
Q  6 agtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaatt 75  Q
    ||||||||||||||| |||||   |||| | |||||||||||||| |||||||||||| ||| |||||||    
T  9438257 agtacaactcagatgataaaagactgcatgaacatttgatatgttagaacgcaggtttcaacgcacaatt 9438188  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 30524191 - 30524236
Alignment:
Q  3 gtaagtacaactcagatggtaaaattttgcagggacatttgatatg 48  Q
    |||||||||||||||||| ||||   ||||||||||||||||||||    
T  30524191 gtaagtacaactcagatgataaatagttgcagggacatttgatatg 30524236  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 7326607 - 7326651
Alignment:
Q  6 agtacaactcagatggtaaaattttgcagggacatttgatatgtt 50  Q
    ||||||||||| |||||||||  ||||| ||||||||||||||||    
T  7326607 agtacaactcatatggtaaaaggttgcatggacatttgatatgtt 7326651  T

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