View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_35 (Length: 228)
Name: NF20530_low_35
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 49181025 - 49181236
Alignment:
| Q |
3 |
tcgatgggatacattagcttatgaattgtaatcctctagaatttactgctcctctggctaattcatattaattcttagttctctttctcactctttacat |
102 |
Q |
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| T |
49181025 |
tcgatgggatacattagcttatgaattgtaatcctctagaatttactgctcctctggctaattcatattaattcttagttctctttctcactcttcacat |
49181124 |
T |
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| Q |
103 |
aatccttttatatttaagcacagtataaaagcatctttggccaagttgtcacatgttcaagaaccactcccaaaagcttaagttgc-ttggtggaaatcc |
201 |
Q |
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| T |
49181125 |
aatccttttatatttaagcacagtttaaaagcatctttggccaagttgtcacatgttcaagaaccactcccaaaagcttaagttgctttggtggaaatcc |
49181224 |
T |
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| Q |
202 |
atgaatggtttt |
213 |
Q |
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|||||||||||| |
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| T |
49181225 |
atgaatggtttt |
49181236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 7895763 - 7895688
Alignment:
| Q |
138 |
tttggccaagttgtcacatgttcaagaaccactcccaaaagcttaagttgcttggtggaaatccatgaatggtttt |
213 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||| ||| | ||||||||| ||||||||||||| |
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| T |
7895763 |
tttggccaagttgtcttttgttcaagaaccattcccaaaagcttaaattgttaggtggaaatgcatgaatggtttt |
7895688 |
T |
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