View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_36 (Length: 210)
Name: NF20530_low_36
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_36 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 3216773 - 3216982
Alignment:
| Q |
1 |
cctgttgccgtacctttagcgttgccgaagacattggcccactgtacaagccttccagcagccgtgctggccgtgtgagttccgtggccaacatcatcga |
100 |
Q |
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| T |
3216773 |
cctgttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagttccgtggccaacatcatcga |
3216872 |
T |
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| Q |
101 |
atggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattt |
200 |
Q |
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| T |
3216873 |
atggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattt |
3216972 |
T |
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| Q |
201 |
tgcaggtgga |
210 |
Q |
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|||||||||| |
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| T |
3216973 |
tgcaggtgga |
3216982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 3202909 - 3203060
Alignment:
| Q |
50 |
gccttccagcagccgtgctggccgtgtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgag |
149 |
Q |
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| T |
3202909 |
gccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaattt---------acgatgttccttgctccaatgat |
3202999 |
T |
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| Q |
150 |
cttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtgga |
210 |
Q |
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| T |
3203000 |
cttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtgga |
3203060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 3208883 - 3209033
Alignment:
| Q |
50 |
gccttccagcagccgtgctggccgtgtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgag |
149 |
Q |
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| T |
3208883 |
gccttccagcggccgtgctggctgtgtgagttccatggccaacatcatcgtatggaagggatgaattt---------acaaaggtccttgctccaatgat |
3208973 |
T |
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| Q |
150 |
cttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtgg |
209 |
Q |
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| T |
3208974 |
cttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtgg |
3209033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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