View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20530_low_4 (Length: 639)
Name: NF20530_low_4
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 99 - 623
Target Start/End: Original strand, 49180320 - 49180844
Alignment:
| Q |
99 |
gaaaatgctgctagttgctattgaacgcggggaaggattcctgttaaattctttgtttaatgcagtgacttacaaaaatggctatatgccacgtataaga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49180320 |
gaaaatgctgctagttgctattgaacgcggggaaggattcctgttaaattctttgttcaatgcagtgacttacaaaaatggctatatgccacgtataaga |
49180419 |
T |
|
| Q |
199 |
tgagtttgctgctacagggctggaagtcaggtttgagactgtgtctgtgttttgtttgatcttcctttcgttcactatgcatactattcatggttcctca |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49180420 |
tgagtttgctgctacagggctggaagtcaggtttgagactgtgtctgtgttttgtttgatcttcctttcgttcactatgcatactattcatggttcctca |
49180519 |
T |
|
| Q |
299 |
catgttattatagataaaatgatatgcccaatccttgcnnnnnnntggtgagttttgtgagatacgcctgtgcaagcatggatcaatctgtgttttttgg |
398 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49180520 |
catgttattacagataaaatgatatgcccaatccttgcgaaaaaatggtgagttttgtgagatacgcctgtgcaagcatggatcaatctgtgtttttctg |
49180619 |
T |
|
| Q |
399 |
aaagaaacttttgtctggattgtaagcgttcgctgtgctgtttctcttgttgtcttgaatttaatttcaatttgctatgcccctttgtggttctgatcca |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49180620 |
aaagaaacttttgtctggattgtaagcgttcgctgtgctgtttctcttgttgtcttgaatttaatttcaatttgctatgcccctttgtggttctgatcca |
49180719 |
T |
|
| Q |
499 |
ataactcaccgaagtctcaagttttcataaattttctgcaatctgatacaaaactctttaaaaacagccctgcttgtcgttatgcttgtataatttgttc |
598 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49180720 |
ataactcacccaagtctcaagttttcataaattttctgcaatctgatacaaaactctttaaaaacagccctgcttgtctttatgcttgtataatttgttc |
49180819 |
T |
|
| Q |
599 |
ttggtttaggcggtgaaccgaacta |
623 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
49180820 |
ttggtttaggcggtgaaccgaacta |
49180844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 49180160 - 49180247
Alignment:
| Q |
17 |
taggtcattaaaggtgaaaatcactaaatttgtccttcacctattgcatggttgacaactacataattgttaacttttgtgggaaaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49180160 |
taggtcattaaaggtgaaaatcactaaatttgtccttcacctattgcatggttgacaactacataattgttaacttttgtgggaaaat |
49180247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University