View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20530_low_6 (Length: 618)

Name: NF20530_low_6
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20530_low_6
NF20530_low_6
[»] chr7 (14 HSPs)
chr7 (51-316)||(26302826-26303095)
chr7 (385-618)||(26121260-26121492)
chr7 (385-618)||(26129515-26129747)
chr7 (383-617)||(26180029-26180262)
chr7 (428-618)||(19102559-19102749)
chr7 (383-617)||(26156137-26156369)
chr7 (483-618)||(26278641-26278776)
chr7 (457-618)||(26243345-26243506)
chr7 (483-616)||(26192212-26192345)
chr7 (483-618)||(26298393-26298528)
chr7 (457-618)||(26251793-26251954)
chr7 (490-618)||(26204830-26204958)
chr7 (549-618)||(26302754-26302823)
chr7 (490-601)||(26224484-26224595)
[»] chr4 (1 HSPs)
chr4 (443-616)||(44904200-44904373)
[»] chr5 (1 HSPs)
chr5 (314-354)||(2769347-2769387)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 51 - 316
Target Start/End: Complemental strand, 26303095 - 26302826
Alignment:
Q  51 ttatattattgcagcttgtctaacgtacaactcttaatccctagaaactttttta----taactttagagaatgattttggaacaaagaaatttagttat 146  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||    
T  26303095 ttatattattgcagcttgtctaaagtgcaactcttaattcctagaaacttttttacgtataactttagagaatgattttggaacaaagaaatttagttat 26302996  T
Q  147 gtcattaaccaatttcactactacattaataatagtaatgtgcgttgttaatcacttttagaatctatgtacttatgtaagtttggaaactacgtaaaaa 246  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26302995 gtcattaaccaatttcactactacattaatattaggaatgtgcgttgttaatcacttttagaatctatgtacttatgtaagtttggaaactatgtaaaaa 26302896  T
Q  247 taagatatcaacgtcatacattgttgtggttaatgaagtagtcatacttgaccataaaaaatgaagcaat 316  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26302895 taagatattaacgtcttacattgttgtggttaatgaagtagtcatacttgaccataaaaaatgaagcaat 26302826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 385 - 618
Target Start/End: Complemental strand, 26121492 - 26121260
Alignment:
Q  385 tttcatcttattgaaagacttcttcagatacatctcctgaaagcatcaaacattactccttcatttgacttatctaatctgctttcccaccaagcttctt 484  Q
    ||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    ||    
T  26121492 tttcatcttattgaaagccttcatcagatacacctcctgaa-gcatcaaacattactccttcatttgacttatctaatctgctttctcaccaagtgcttt 26121394  T
Q  485 agatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagattt 584  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |||||||| ||     
T  26121393 agatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatgtccacgttcctctataatcctcttggcagcctcaccaagtttc 26121294  T
Q  585 ttagctttcttcctcatttctttgctctcttggc 618  Q
    || ||| || || |||||||||||||||||||||    
T  26121293 tttgctctcatcatcatttctttgctctcttggc 26121260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 385 - 618
Target Start/End: Complemental strand, 26129747 - 26129515
Alignment:
Q  385 tttcatcttattgaaagacttcttcagatacatctcctgaaagcatcaaacattactccttcatttgacttatctaatctgctttcccaccaagcttctt 484  Q
    |||||||||||| |||| |||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    ||    
T  26129747 tttcatcttattaaaagccttcatcaaatacacctcctgaa-gcatcaaacattactccttcatttgacttatctaatctgctttctcaccaagtgcttt 26129649  T
Q  485 agatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagattt 584  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| |||    
T  26129648 agatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctcaatagtcctcttggcagcctcaccaagcttt 26129549  T
Q  585 ttagctttcttcctcatttctttgctctcttggc 618  Q
    || ||| || ||||||||||||||||||||||||    
T  26129548 tttgctctcatcctcatttctttgctctcttggc 26129515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 383 - 617
Target Start/End: Complemental strand, 26180262 - 26180029
Alignment:
Q  383 tgtttcatcttattgaaagacttcttcagatacatctcctgaaagcatcaaacattactccttcatttgacttatctaatctgctttcccaccaagcttc 482  Q
    ||||||||||||||||||| |||| || | |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||   |    
T  26180262 tgtttcatcttattgaaagccttcatctgctacacctcctgaa-gcatcaaacatcactccttcatttgacttatctaatctgctttcacaccaagtgcc 26180164  T
Q  483 ttagatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagat 582  Q
    ||||||||||| || ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||| |    
T  26180163 ttagatttctttaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctcaatagtcctcttggaagcatcaccaagtt 26180064  T
Q  583 ttttagctttcttcctcatttctttgctctcttgg 617  Q
    | || ||| || |||||||||||||||||||||||    
T  26180063 tctttgctctcatcctcatttctttgctctcttgg 26180029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 428 - 618
Target Start/End: Original strand, 19102559 - 19102749
Alignment:
Q  428 catcaaacattactccttcatttgacttatctaatctgctttcccaccaagcttcttagatttcttcaaagatttcagctcatcaatcaagcgaatcaag 527  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||   ||||||||||||||| ||||||||||||||||||||  ||||||||    
T  19102559 catcaaacattactccttcatttgaattatctaatctgctttctcaccaagtgacttagatttcttcaatgatttcagctcatcaatcaacagaatcaag 19102658  T
Q  528 ttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagatttttagctttcttcctcatttctttgctctcttggc 618  Q
    ||||||| ||| |||||||| ||||||||||||||||| |||||||||||||| || || ||| || ||||||||||||||||||||||||    
T  19102659 ttgttgtgagagtgtccaccctcctctatagtcctctttgcagcatcaccaagcttctttgctctcatcctcatttctttgctctcttggc 19102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 383 - 617
Target Start/End: Complemental strand, 26156369 - 26156137
Alignment:
Q  383 tgtttcatcttattgaaagacttcttcagatacatctcctgaaagcatcaaacattactccttcatttgacttatctaatctgctttcccaccaagcttc 482  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||  ||||| || ||||        
T  26156369 tgtttcatcttattgaaagtcttcatcagatacatctcct-aaagcatcaaccactactccttcatttgacttatctaatca-ctttctcatcaagtggt 26156272  T
Q  483 ttagatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagat 582  Q
    |||||||||||||| |||||||| |||||||||||  ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |    
T  26156271 ttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcatcaccaagtt 26156172  T
Q  583 ttttagctttcttcctcatttctttgctctcttgg 617  Q
    | || ||| ||  ||||||| ||||||||||||||    
T  26156171 tctttgctctcaccctcattgctttgctctcttgg 26156137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 483 - 618
Target Start/End: Complemental strand, 26278776 - 26278641
Alignment:
Q  483 ttagatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagat 582  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  26278776 ttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagagtgtccaccttcctctatagtcctcttggcagcatcaccaagtt 26278677  T
Q  583 ttttagctttcttcctcatttctttgctctcttggc 618  Q
    | || ||| || ||||||||||||||||||||||||    
T  26278676 tctttgctctcatcctcatttctttgctctcttggc 26278641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 457 - 618
Target Start/End: Complemental strand, 26243506 - 26243345
Alignment:
Q  457 tctaatctgctttcccaccaagcttcttagatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctat 556  Q
    |||||||||||||| || ||||| | |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| | |||||| ||||||||    
T  26243506 tctaatctgctttctcatcaagcgttttagatttcttcaacgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccctcctctat 26243407  T
Q  557 agtcctcttggcagcatcaccaagatttttagctttcttcctcatttctttgctctcttggc 618  Q
    |||||| ||||||||||||||||| || || ||| || ||||||||||||||||||||||||    
T  26243406 agtccttttggcagcatcaccaagtttctttgctctcatcctcatttctttgctctcttggc 26243345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 483 - 616
Target Start/End: Complemental strand, 26192345 - 26192212
Alignment:
Q  483 ttagatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagat 582  Q
    |||||||||||||  ||||||||||||||||| ||  |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |    
T  26192345 ttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtatgaatgtccaccttcctctatagtcctcttggaagcatcaccaagtt 26192246  T
Q  583 ttttagctttcttcctcatttctttgctctcttg 616  Q
    | || ||| || ||||||||||||||||||||||    
T  26192245 tctttgctctcatcctcatttctttgctctcttg 26192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 483 - 618
Target Start/End: Complemental strand, 26298528 - 26298393
Alignment:
Q  483 ttagatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagat 582  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| | ||||||||| |||||||||||||||||||| || | ||| |    
T  26298528 ttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcctcgctaagtt 26298429  T
Q  583 ttttagctttcttcctcatttctttgctctcttggc 618  Q
    | || ||| || ||||||||||||||||||||||||    
T  26298428 tctttgctctcatcctcatttctttgctctcttggc 26298393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 457 - 618
Target Start/End: Complemental strand, 26251954 - 26251793
Alignment:
Q  457 tctaatctgctttcccaccaagcttcttagatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctat 556  Q
    |||||||||| ||  ||||||||   ||| |||||||||| ||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||    
T  26251954 tctaatctgcattttcaccaagcgctttatatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctat 26251855  T
Q  557 agtcctcttggcagcatcaccaagatttttagctttcttcctcatttctttgctctcttggc 618  Q
     ||||| ||||| ||||| ||||| || || ||| || ||||||||||||||||||||||||    
T  26251854 cgtccttttggctgcatcgccaagtttctttgctctcatcctcatttctttgctctcttggc 26251793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 490 - 618
Target Start/End: Complemental strand, 26204958 - 26204830
Alignment:
Q  490 tcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagatttttagc 589  Q
    ||||||| ||||| ||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| || || ||    
T  26204958 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcttcttggcagcatcaccaagcttctttgc 26204859  T
Q  590 tttcttcctcatttctttgctctcttggc 618  Q
    | || ||||||||||||||||| ||||||    
T  26204858 tctcatcctcatttctttgctcacttggc 26204830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 549 - 618
Target Start/End: Complemental strand, 26302823 - 26302754
Alignment:
Q  549 tcctctatagtcctcttggcagcatcaccaagatttttagctttcttcctcatttctttgctctcttggc 618  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26302823 tcctctatagtcctcttggaagcagcaccaagatttttagctttcttcctcatttctttgctctcttggc 26302754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 490 - 601
Target Start/End: Complemental strand, 26224595 - 26224484
Alignment:
Q  490 tcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgtccaccttcctctatagtcctcttggcagcatcaccaagatttttagc 589  Q
    ||||||| ||||| ||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||| || || ||    
T  26224595 tcttcaatgattttagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctctatagtcttctttgcagcatcaccaagcttctttgc 26224496  T
Q  590 tttcttcctcat 601  Q
    | || |||||||    
T  26224495 tctcatcctcat 26224484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 443 - 616
Target Start/End: Complemental strand, 44904373 - 44904200
Alignment:
Q  443 cttcatttgacttatctaatctgctttcccaccaagcttcttagatttcttcaaagatttcagctcatcaatcaagcgaatcaagttgttgtaagactgt 542  Q
    |||||||| | ||||||||||||||||| |||||||    || ||||||||||| |||||||||||||| |||||  ||| ||||||||||||||| |||    
T  44904373 cttcatttcagttatctaatctgctttctcaccaagtgctttggatttcttcaatgatttcagctcatctatcaactgaaccaagttgttgtaagagtgt 44904274  T
Q  543 ccaccttcctctatagtcctcttggcagcatcaccaagatttttagctttcttcctcatttctttgctctcttg 616  Q
    |||||||||||||||||||||||||||||||| ||||  ||||| ||| || |||||||||||||||| |||||    
T  44904273 ccaccttcctctatagtcctcttggcagcatcgccaaacttttttgctctcgtcctcatttctttgctgtcttg 44904200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 2769347 - 2769387
Alignment:
Q  314 aatcaaagtggtaaatgaaatttatgtttcaaaagtggtta 354  Q
    ||||||||| || |||||||||||||||| |||||||||||    
T  2769347 aatcaaagtagttaatgaaatttatgttttaaaagtggtta 2769387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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