View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20530_low_8 (Length: 503)
Name: NF20530_low_8
Description: NF20530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20530_low_8 |
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| [»] scaffold0302 (3 HSPs) |
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Alignment Details
Target: scaffold0302 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 215 - 495
Target Start/End: Complemental strand, 19233 - 18952
Alignment:
| Q |
215 |
aaagagaaaacagtgaactctcttatagtttcatgagagaagctggagtatacac--ggtcatatttacaatatttattgtattaggattcaggggcaat |
312 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||||| | |
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| T |
19233 |
aaagagaaaacaatgaactctcttatagtttcatgagagaagctggagtatacacacgatcatatttacaatatt-attgtattaggatttaggggcact |
19135 |
T |
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| Q |
313 |
tttgtcttttcgcccaaaaattgagcccattctctcgttttcggtcctattgagcgcggaaaggattttgaggtgggacctagccaaatctttctttcca |
412 |
Q |
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|||||||||||||||||||||||||||||||||| || |||| |||| |||||||||| ||||||||||| |||||| || ||| ||||||||||||||| |
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| T |
19134 |
tttgtcttttcgcccaaaaattgagcccattctcccgctttccgtccaattgagcgcgtaaaggattttggggtgggtcccagctaaatctttctttcca |
19035 |
T |
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| Q |
413 |
ttaccttttcatatttattccaaactatggaaactcaatccttccatcctctttccctcccttcactatctttccttcttctc |
495 |
Q |
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||||||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
19034 |
ttacctttttatatttgttccaaacaatggaaactcaatccttcgatcctctttccctcccttcacgatctttccttcttctc |
18952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 19491 - 19428
Alignment:
| Q |
15 |
gagaaaacatagaaggaataaaatttcatcaaaagaaaatcaatttcatgcatagaagataatg |
78 |
Q |
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| T |
19491 |
gagaaaacatagaaggaataaaatttcatcaaaacaaaatcaatttcatgcatagaagataatg |
19428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 19341 - 19288
Alignment:
| Q |
166 |
agagagttagaagagtaccttacaaaacaataagttactgattgatggtaaaga |
219 |
Q |
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|||||||||||| |||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
19341 |
agagagttagaatagtagcttacaaaacaatgagttactgattgatggcaaaga |
19288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 215 - 495
Target Start/End: Complemental strand, 12856696 - 12856415
Alignment:
| Q |
215 |
aaagagaaaacagtgaactctcttatagtttcatgagagaagctggagtatacac--ggtcatatttacaatatttattgtattaggattcaggggcaat |
312 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||| | |
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| T |
12856696 |
aaagagaaaacaatgaactctcttctagtttcatgagagaagctggagtatacacacgggcatatttacaatatt-attgtattaggatttaggggcact |
12856598 |
T |
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| Q |
313 |
tttgtcttttcgcccaaaaattgagcccattctctcgttttcggtcctattgagcgcggaaaggattttgaggtgggacctagccaaatctttctttcca |
412 |
Q |
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|||||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||| |||||| || ||| ||||||||||||||| |
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| T |
12856597 |
tttgtcttttcgcccaaaaattgagcccattctcccactttccgtccaattgagcgcggaaaggattttggggtgggtcccagctaaatctttctttcca |
12856498 |
T |
|
| Q |
413 |
ttaccttttcatatttattccaaactatggaaactcaatccttccatcctctttccctcccttcactatctttccttcttctc |
495 |
Q |
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||||||||| |||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
12856497 |
ttacctttttatatttgttccaaacaatggaaactcaatccttccatcctttttccctcccttcacaatctttccttcttctc |
12856415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 12856954 - 12856891
Alignment:
| Q |
15 |
gagaaaacatagaaggaataaaatttcatcaaaagaaaatcaatttcatgcatagaagataatg |
78 |
Q |
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| T |
12856954 |
gagaaaacatataaggaataaaatttcatcaaaacaaaatcaatttcatgcatagaagataatg |
12856891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 12856804 - 12856751
Alignment:
| Q |
166 |
agagagttagaagagtaccttacaaaacaataagttactgattgatggtaaaga |
219 |
Q |
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|||||||||||| ||||||||||| |||||| ||||||||||||||| ||||| |
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| T |
12856804 |
agagagttagaatagtaccttacacaacaatgggttactgattgatggcaaaga |
12856751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 50373624 - 50373664
Alignment:
| Q |
454 |
ttccatcctctttccctcccttcactatctttccttcttct |
494 |
Q |
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||||||| |||||||||||| |||| ||||||||||||||| |
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| T |
50373624 |
ttccatcatctttccctcccatcacaatctttccttcttct |
50373664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 304 - 489
Target Start/End: Original strand, 20257806 - 20257991
Alignment:
| Q |
304 |
aggggcaattttgtcttttcgcccaaaaattgagcccattctctcgttttcggtcctattgagcgcggaaaggattttgaggtgggacctagccaaatct |
403 |
Q |
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||||||| ||||||||||| || ||||||||||| |||||||| | |||| |||| |||||||| |||||||||||| |||||| || | ||||| || |
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| T |
20257806 |
aggggcacttttgtctttttgctcaaaaattgagtccattctcccactttcagtccaattgagcgtggaaaggattttttggtgggccccaaccaaaact |
20257905 |
T |
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| Q |
404 |
ttctttccattaccttttcatatttattccaaactatggaaactcaatccttccatcctctttccctcccttcactatctttcctt |
489 |
Q |
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|||||||| | ||||||| |||||| ||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20257906 |
ttctttccttgacctttttatatttgttcaaaaccatggaaacacaatccttccatcctctttacctcccttcactatctttcctt |
20257991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 20257476 - 20257539
Alignment:
| Q |
15 |
gagaaaacatagaaggaataaaatttcatcaaaagaaaatcaatttcatgcatagaagataatg |
78 |
Q |
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||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
20257476 |
gagaaaacatacaaggaataaaatttcatcaaaacaaaataaatctcatgcatagaagataatg |
20257539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 42823499 - 42823435
Alignment:
| Q |
15 |
gagaaaacatagaaggaataaaatttcatcaaaa-gaaaatcaatttcatgcatagaagataatg |
78 |
Q |
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||||||||| |||||||| || | |||||||||| |||||||||||||||| | | ||||||||| |
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| T |
42823499 |
gagaaaacacagaaggaacaacaattcatcaaaaagaaaatcaatttcatggacaaaagataatg |
42823435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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