View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20531_high_3 (Length: 409)

Name: NF20531_high_3
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20531_high_3
NF20531_high_3
[»] chr2 (22 HSPs)
chr2 (20-245)||(21794438-21794663)
chr2 (19-196)||(18163940-18164118)
chr2 (19-213)||(43081581-43081778)
chr2 (19-213)||(45485735-45485929)
chr2 (209-337)||(5989243-5989371)
chr2 (209-337)||(45485963-45486091)
chr2 (69-196)||(302387-302513)
chr2 (69-214)||(295733-295878)
chr2 (20-188)||(13273316-13273468)
chr2 (69-175)||(39190647-39190753)
chr2 (124-193)||(29960364-29960433)
chr2 (24-95)||(45497005-45497078)
chr2 (24-95)||(45504747-45504820)
chr2 (202-245)||(43081809-43081852)
chr2 (21-63)||(5983570-5983612)
chr2 (209-245)||(5983380-5983416)
chr2 (209-245)||(13273211-13273247)
chr2 (209-245)||(18163796-18163832)
chr2 (20-63)||(1645148-1645191)
chr2 (20-63)||(4285175-4285218)
chr2 (20-63)||(5989527-5989570)
chr2 (69-119)||(29960425-29960475)
[»] chr5 (11 HSPs)
chr5 (19-210)||(9507626-9507817)
chr5 (19-213)||(9503641-9503835)
chr5 (206-363)||(9503466-9503623)
chr5 (19-210)||(32090199-32090390)
chr5 (202-337)||(9507471-9507606)
chr5 (20-193)||(34854063-34854243)
chr5 (22-183)||(3627510-3627671)
chr5 (218-310)||(28872330-28872422)
chr5 (69-119)||(690121-690171)
chr5 (20-63)||(3031580-3031623)
chr5 (20-63)||(43095199-43095241)
[»] chr4 (10 HSPs)
chr4 (132-337)||(56563055-56563260)
chr4 (20-193)||(53011169-53011343)
chr4 (209-336)||(53010974-53011101)
chr4 (20-214)||(53008256-53008449)
chr4 (69-178)||(5715318-5715427)
chr4 (86-188)||(16853976-16854078)
chr4 (69-193)||(50935665-50935784)
chr4 (71-213)||(50911862-50912000)
chr4 (209-245)||(53008159-53008195)
chr4 (213-245)||(16854128-16854160)
[»] chr3 (16 HSPs)
chr3 (24-213)||(531482-531671)
chr3 (209-337)||(32813384-32813512)
chr3 (218-333)||(27237112-27237227)
chr3 (80-213)||(4315552-4315685)
chr3 (69-196)||(28920270-28920397)
chr3 (99-193)||(32813598-32813692)
chr3 (20-153)||(47743868-47744004)
chr3 (26-105)||(55418487-55418567)
chr3 (143-213)||(55418408-55418478)
chr3 (202-245)||(531688-531731)
chr3 (19-60)||(32813716-32813757)
chr3 (204-245)||(55418362-55418403)
chr3 (209-245)||(4315482-4315518)
chr3 (209-245)||(32813091-32813127)
chr3 (209-240)||(11171985-11172016)
chr3 (20-63)||(27237725-27237767)
[»] chr6 (5 HSPs)
chr6 (20-245)||(7501317-7501560)
chr6 (20-213)||(31888483-31888677)
chr6 (69-196)||(28249226-28249353)
chr6 (218-292)||(367474-367548)
chr6 (209-246)||(31888329-31888366)
[»] chr7 (7 HSPs)
chr7 (22-211)||(22582288-22582480)
chr7 (81-213)||(45937828-45937960)
chr7 (84-196)||(297081-297193)
chr7 (76-193)||(293191-293308)
chr7 (20-63)||(35323971-35324014)
chr7 (213-245)||(22582548-22582580)
chr7 (209-245)||(35324170-35324206)
[»] chr8 (6 HSPs)
chr8 (22-196)||(11096136-11096308)
chr8 (69-213)||(37186788-37186932)
chr8 (69-193)||(37786581-37786705)
chr8 (99-214)||(37791182-37791296)
chr8 (212-245)||(14685248-14685281)
chr8 (202-245)||(11096073-11096116)
[»] scaffold0038 (1 HSPs)
scaffold0038 (69-196)||(49388-49515)
[»] chr1 (2 HSPs)
chr1 (69-196)||(44541359-44541486)
chr1 (242-315)||(28451021-28451093)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 21794438 - 21794663
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaact 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||| ||||||||||||    
T  21794438 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatatatttataacacatgagtaagtatatatacaactggacgttgtaacaaact 21794537  T
Q  120 cctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagctaaaact 219  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||  || || |||||||||||||||    
T  21794538 cctctaacaaactaactaccttggttaacacgctaaccatggtttgttactagactctgcttctgaagacatcagaagctgcacatcagaagctaaaact 21794637  T
Q  220 aactaaactgaattactaaaccaata 245  Q
    |||||||||||| |||||||||||||    
T  21794638 aactaaactgaactactaaaccaata 21794663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 18164118 - 18163940
Alignment:
Q  19 cagagatatgagtaaaagacttgtgtaattttattgaatgaatt-gtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  18164118 cagagatatgagtaaaagacttgtgtaattttattgaatgaattcgtcatctatttacaacacttgagtgagtatatatacaactggacgttgtaacaaa 18164019  T
Q  118 ctcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaa 196  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  18164018 ctcctctaacaaactaactaccttggttaacacgctaaccaatggttattactagactctacttctaaagacatcagaa 18163940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 43081581 - 43081778
Alignment:
Q  19 cagagatatgagtaaaagacttgtgtaattttattgaatgaa---ttgtcatctatttacaacacatgagtgagtatatatataactggacattgtaaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||    
T  43081581 cagagatatgagtaaaagacttgtgtaattttattgaatgaaaaattgtcatctatttacaacacatgagtgagtacatatacaattggacgttgtaaca 43081680  T
Q  116 aactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 213  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||  || || |||||||||    
T  43081681 aactcctataacaaactaactaccttcgttaacatgctaaccaatgtttattactagactctgcttctgaagacatcagaagctgcacatcagaagct 43081778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 45485735 - 45485929
Alignment:
Q  19 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtc--atctatttacaacacatgagtgagtatatatataactggacattgtaacaa 116  Q
    |||||||||||||||  ||||| ||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  45485735 cagagatatgagtaa--gacttttgtaattttattgaatgaattgtctaatttatttacaacacatgagtgagtatatatacaactggacgttgtaacaa 45485832  T
Q  117 actcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||  || ||||||||||||    
T  45485833 actcctctaacaaactaactaccttggttaacacgctaaccaaggtttgttgctagactctgtttctgaagacatcagaagctgcacttcagaagct 45485929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 5989371 - 5989243
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5989371 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattcatttacttagatgcttcagccattcctaacttcttcttcaagtaatcaa 5989272  T
Q  309 agttgcttagctttaatggctttgtgagc 337  Q
    || |||||||||| |||||||||||||||    
T  5989271 agctgcttagcttcaatggctttgtgagc 5989243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 209 - 337
Target Start/End: Original strand, 45485963 - 45486091
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaa 308  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45485963 aagctaaaactaactaaactgaattactaaacaaatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaa 45486062  T
Q  309 agttgcttagctttaatggctttgtgagc 337  Q
    || | |||||||| |||||||||||||||    
T  45486063 agctacttagcttcaatggctttgtgagc 45486091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 302513 - 302387
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||    
T  302513 tatttacaacacat-agtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactaccctggttaacacgctaaccaaggttggtta 302415  T
Q  169 ctagactctgcttctaaagacatcagaa 196  Q
    ||||||||||||||| ||||||||||||    
T  302414 ctagactctgcttctgaagacatcagaa 302387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 295878 - 295733
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |||||||  |||    
T  295878 tatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactatcctggttaacacactaatcaaggttggtta 295779  T
Q  169 ctagactctgcttctaaagacatcagaaattgtacttcagaagcta 214  Q
    ||||||||||||||| ||||||||||||  || || ||||||||||    
T  295778 ctagactctgcttctgaagacatcagaagctgcacatcagaagcta 295733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 13273468 - 13273316
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaact 119  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||                 
T  13273468 agagatatgagtaaaagacttgtgtaattttattgaataaattgtcatatatttacaacacatgagtgaatatatatacaactggac------------- 13273382  T
Q  120 cctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaaga 188  Q
        ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  13273381 ---gtaacaaactaactaccttggttaacacgctaaccaaggtttgttactagactctgcttctgaaga 13273316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 39190647 - 39190753
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||    
T  39190647 tatttacaacacatgagtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaactaccttggttaacatgctaaccaaagtttgtta 39190746  T
Q  169 ctagact 175  Q
    |||||||    
T  39190747 ctagact 39190753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 29960433 - 29960364
Alignment:
Q  124 taacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatca 193  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  29960433 taacaaactaactaccttggttaacacgctaaccaaggtttgttactagaccctgcttctgaagacatca 29960364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 45497005 - 45497078
Alignment:
Q  24 atatgagtaaaagacttgtgtaattttattgaatgaattgtc--atctatttacaacacatgagtgagtatata 95  Q
    ||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||    
T  45497005 atatgagtaaaagacttgtgtaattttattgaatgaattatctaatttatttacaacacatgagtgagtatata 45497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 45504747 - 45504820
Alignment:
Q  24 atatgagtaaaagacttgtgtaattttattgaatgaattgtc--atctatttacaacacatgagtgagtatata 95  Q
    ||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||    
T  45504747 atatgagtaaaagacttgtgtaattttattgaatgaattatctaatttatttacaacacatgagtgagtatata 45504820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 43081809 - 43081852
Alignment:
Q  202 acttcagaagctaaaactaactaaactgaattactaaaccaata 245  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  43081809 acttcagaagctaaaactaactaaactgaattactaaactaata 43081852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 5983612 - 5983570
Alignment:
Q  21 gagatatgagtaaaagacttgtgtaattttattgaatgaattg 63  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  5983612 gagatatgaataaaagacttgtgtaattttattgaatgaattg 5983570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 5983416 - 5983380
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaata 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  5983416 aagctaaaactaactaaactgaattactaaaccaata 5983380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 13273247 - 13273211
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaata 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  13273247 aagctaaaactaactaaactgaattactaaaccaata 13273211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 18163832 - 18163796
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaata 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  18163832 aagctaaaactaactaaactgaattactaaaccaata 18163796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 1645191 - 1645148
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 63  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  1645191 agagatatgagtaaaagacttatataattttattgaatgaattg 1645148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 4285218 - 4285175
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 63  Q
    |||| ||||| |||||||||||||||||||||||||||||||||    
T  4285218 agaggtatgaataaaagacttgtgtaattttattgaatgaattg 4285175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 5989570 - 5989527
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 63  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  5989570 agagatatgtataaaagacttgtgtaattttattgaatgaattg 5989527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 29960475 - 29960425
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaact 119  Q
    |||||||||||||| |||||||||||||| |||| ||| ||||||||||||    
T  29960475 tatttacaacacataagtgagtatatatacaactagacgttgtaacaaact 29960425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 9507817 - 9507626
Alignment:
Q  19 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  9507817 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgggtatatatataactggacgttgtaacaaac 9507718  T
Q  119 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaa 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  9507717 tcctttaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagttgtacttcagaa 9507626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 9503835 - 9503641
Alignment:
Q  19 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9503835 cagagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacgttgtaacaaac 9503736  T
Q  119 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 213  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9503735 tcctctaacaaactaactatcttgattaacacgctaaccaaagtttattactagactctgcttctgaagacttcagaaattgtacttcagaagct 9503641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 206 - 363
Target Start/End: Complemental strand, 9503623 - 9503466
Alignment:
Q  206 cagaagctaaaactaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaat 305  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9503623 cagaagctaaaactaactaaattgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaat 9503524  T
Q  306 caaagttgcttagctttaatggctttgtgagctatacttcagaaattgtatttcagaa 363  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||  |||| |||||||    
T  9503523 caaagctgcttagctttaatggctttgtgagctgtacttcagaagatgtacttcagaa 9503466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 32090390 - 32090199
Alignment:
Q  19 cagagatatgagtaaaagacttgtgtaattttattgaatgaattg-tcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  32090390 cagagatatgagtaaaagacttgtgtaattttattgaatgaattcatcat-tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaa 32090292  T
Q  118 ctcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaa 210  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||| ||||| ||||||||||||  ||||||||||||    
T  32090291 ctcctctaacaaactaactacattggttaacacgctaaccgaggtttgttactagattctacttctgaagacatcagaagctgtacttcagaa 32090199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 202 - 337
Target Start/End: Complemental strand, 9507606 - 9507471
Alignment:
Q  202 acttcagaagctaaaactaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaag 301  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9507606 acttcagaagctaaaactaactaaattgaattactaaaccaatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaag 9507507  T
Q  302 taatcaaagttgcttagctttaatggctttgtgagc 337  Q
    ||||||||||||||||||||||||||||||||||||    
T  9507506 taatcaaagttgcttagctttaatggctttgtgagc 9507471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 34854243 - 34854063
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaa--ttgtcatctatttacaacacatgagtgagtatatata-----taactggacattgta 112  Q
    |||||||||||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||      |||||||| |||||    
T  34854243 agagatatgagtaaaagatttgtgtaattttattgaatgaaaattgtcatttatttacaacacatgagtgagtatatatacaactgaactggacgttgta 34854144  T
Q  113 acaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatca 193  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  34854143 acaaactcctctaacaaattaactaccttggttaacacgctaaccaaagtttattactagactctgcttctgaagacatca 34854063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 3627671 - 3627510
Alignment:
Q  22 agatatgagtaaaagacttgtgtaattttattgaat-gaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaactc 120  Q
    ||||||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||     
T  3627671 agatatgag-aaaagatttgtgtaattttattgaattgaattctcatttatttacaacacatgagtgagtatatatacatctggacgttgtaacaaactt 3627573  T
Q  121 ctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttct 183  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||    
T  3627572 ctctaataaactaactacattggttaacacgctaaccaagatttgctactagactctgcttct 3627510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 218 - 310
Target Start/End: Original strand, 28872330 - 28872422
Alignment:
Q  218 ctaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaag 310  Q
    |||| |||| ||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||    
T  28872330 ctaaataaaatgaattactaatccagtacaccaccttaatttatttagttagatgcttcagccattcccaacttcattttcaagtaatcaaag 28872422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 690171 - 690121
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaact 119  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  690171 tatttacaacacatgagtgagtatatatacaactgaacattgtaacaaact 690121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 3031623 - 3031580
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 63  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  3031623 agagaaatgagtagaagacttgtgtaattttattgaatgaattg 3031580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 43095241 - 43095199
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 63  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  43095241 agagatatgagtaaaagacttgtg-aaatttattgaatgaattg 43095199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 132 - 337
Target Start/End: Complemental strand, 56563260 - 56563055
Alignment:
Q  132 taactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagctaaaactaactaaactgaa 231  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||  || |||||| |||||||||||||||||||||||    
T  56563260 taactaccttggttaacacgctaaccaaggtttgttagtagactctgcttctgaagacatcagaagctgcacttcataagctaaaactaactaaactgaa 56563161  T
Q  232 ttactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaagttgcttagctttaatggcttt 331  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  56563160 ttattaaaccaatacacttccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaagctgcttagcttcaatggcttt 56563061  T
Q  332 gtgagc 337  Q
    ||||||    
T  56563060 gtgagc 56563055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 53011343 - 53011169
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatga-gtgagtatatatataactggacattgtaacaaac 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||| |||||||| || |||||||     
T  53011343 agagatatgaataaaagacttgtgtaattttattgaatgaattggcatatatttacaacacaggaagtgagtatatatacaactggacgttttaacaaaa 53011244  T
Q  119 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatca 193  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  53011243 tcctctaacaaactaactaccttggttaacacgctaaccaatgtttgttactagactctgcttctgaagacatca 53011169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 209 - 336
Target Start/End: Complemental strand, 53011101 - 53010974
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53011101 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaa 53011002  T
Q  309 agttgcttagctttaatggctttgtgag 336  Q
    || |||||||||| ||||||||||||||    
T  53011001 agctgcttagcttcaatggctttgtgag 53010974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 53008449 - 53008256
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatga-gtgagtatatatataactggacattgtaacaaac 118  Q
    |||||||||| ||||||||||||  ||||||||||||| ||||| ||| ||||||||||||| || ||||||||||||| |||||||| |||||||||||    
T  53008449 agagatatgaataaaagacttgt--aattttattgaattaattggcatatatttacaacacaggaagtgagtatatatacaactggacgttgtaacaaac 53008352  T
Q  119 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagcta 214  Q
    |||||||||||||||||||  |||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||  ||||||||||||||||    
T  53008351 tcctctaacaaactaactagtttggttaatacgctaaccaatgtttgttactagactctgcttctgaagacatcagaagctgtacttcagaagcta 53008256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 5715427 - 5715318
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||   |||||||||||||||||||||||| |||    
T  5715427 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaattattctggttaacacgctaaccaaggtttgtta 5715328  T
Q  169 ctagactctg 178  Q
    ||||||||||    
T  5715327 ctagactctg 5715318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 16853976 - 16854078
Alignment:
Q  86 tgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaa 185  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |    
T  16853976 tgagtatatatacaactggacgttgtaacaaattcctctaacaaactaactacgttggttaacacgctaaccaaggtttgttactagactctgcttctga 16854075  T
Q  186 aga 188  Q
    |||    
T  16854076 aga 16854078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 50935784 - 50935665
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    ||||||||||||||||||||||||||||| |||| ||  |||||||||||||||||    ||||||||||||||||||||||||||||||| |||| |||    
T  50935784 tatttacaacacatgagtgagtatatatacaactagatgttgtaacaaactcctct----aactaactaccttggttaacacgctaaccaa-gtttgtta 50935690  T
Q  169 ctagactctgcttctaaagacatca 193  Q
    ||||||||  ||||| |||||||||    
T  50935689 ctagactcaacttctgaagacatca 50935665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 50912000 - 50911862
Alignment:
Q  71 tttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattact 170  Q
    ||||||||||||||||||||||||||| ||||||   |||||||||||||||||    ||||||||||||||||||| ||||||||||| |||| |||||    
T  50912000 tttacaacacatgagtgagtatatatacaactgggtgttgtaacaaactcctct----aactaactaccttggttaatacgctaaccaa-gtttgttact 50911906  T
Q  171 agactc-tgcttctaaagacatcagaaattgtacttcagaagct 213  Q
    ||||||  |||||| ||||||||||||  || || |||||||||    
T  50911905 agactcaagcttctgaagacatcagaatctgcacatcagaagct 50911862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 53008195 - 53008159
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaata 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  53008195 aagctaaaactaactaaactgaattactaaaccaata 53008159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 16854128 - 16854160
Alignment:
Q  213 taaaactaactaaactgaattactaaaccaata 245  Q
    ||||||||| |||||||||||||||||||||||    
T  16854128 taaaactaattaaactgaattactaaaccaata 16854160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 531482 - 531671
Alignment:
Q  24 atatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctc 123  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  531482 atatgagtaaaagacttgtgtaatttcattgaatgaattgtcatatatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctc 531581  T
Q  124 taacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 213  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |  |||||||||    
T  531582 taaaaaactaactacctttgttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagttgcatatcagaagct 531671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 32813512 - 32813384
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32813512 aagctaaaactaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaa 32813413  T
Q  309 agttgcttagctttaatggctttgtgagc 337  Q
    || |||||||||| |||||||||| ||||    
T  32813412 agctgcttagcttcaatggctttgcgagc 32813384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 27237227 - 27237112
Alignment:
Q  218 ctaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaagttgctta 317  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27237227 ctaactaaactgaattactaaactaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaagttgctta 27237128  T
Q  318 gctttaatggctttgt 333  Q
    |||| |||||||||||    
T  27237127 gcttcaatggctttgt 27237112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 4315685 - 4315552
Alignment:
Q  80 catgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgc 179  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  4315685 catgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaacgtttgttactagactctgc 4315586  T
Q  180 ttctaaagacatcagaaattgtacttcagaagct 213  Q
    |||| ||| ||||||||  || ||||||||||||    
T  4315585 ttctgaagccatcagaagctgcacttcagaagct 4315552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 28920270 - 28920397
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||| |||||||||||| ||||||||| |||||||||| || ||||    
T  28920270 tatttacaacatatgagtgagtatatatacaactggacgttataacaaactcctctaataaactaactaccctggttaacatgctaaccaagattgatta 28920369  T
Q  169 ctagactctgcttctaaagacatcagaa 196  Q
    ||||||| ||||||| ||||||||||||    
T  28920370 ctagactatgcttctgaagacatcagaa 28920397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 32813692 - 32813598
Alignment:
Q  99 aactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatca 193  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  32813692 aactggacgttgtaacaaactcctctaacaaactaactaccttcgttaacacgctaaccaaggtttgttactagattctgcttctaaagacatca 32813598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 47744004 - 47743868
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaa--ttttattgaat-gaatt-gtcatctatttacaacacatgagtgagtatatatataactggacattgtaaca 115  Q
    ||||||| |||||||||| ||||||||  ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| || |||| ||| ||||||||    
T  47744004 agagatacgagtaaaagatttgtgtaaatttttattgaattgaattcgtcat-tatttacaacacatgagtgaatatatttacaactagacgttgtaaca 47743906  T
Q  116 aactcctctaacaaactaactaccttggttaacacgct 153  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  47743905 aactcctgtaacaaactaactaccttggttaacacgct 47743868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 55418567 - 55418487
Alignment:
Q  26 atgagtaaaagacttgtgtaattttattgaa-tgaattgtcatctatttacaacacatgagtgagtatatatataactgga 105  Q
    ||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| ||||||||||||||||||| |||||||    
T  55418567 atgagtaaaagacttgtgtaattttattgaaatgaatcgtcgtatatttacaatacatgagtgagtatatatacaactgga 55418487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 55418478 - 55418408
Alignment:
Q  143 gttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||| |||||||    
T  55418478 gttaacacgctaaccaaggtttattactagactctgcttctgaagacatcagaagctgttctttagaagct 55418408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 531688 - 531731
Alignment:
Q  202 acttcagaagctaaaactaactaaactgaattactaaaccaata 245  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  531688 acttcagaagctaaaactaactatactgaattactaaaccaata 531731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 32813757 - 32813716
Alignment:
Q  19 cagagatatgagtaaaagacttgtgtaattttattgaatgaa 60  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  32813757 cagagatatgagtaacagacttgtgtaattttattgaatgaa 32813716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 55418403 - 55418362
Alignment:
Q  204 ttcagaagctaaaactaactaaactgaattactaaaccaata 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  55418403 ttcagaagctaaaactaactaaactaaattactaaaccaata 55418362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 4315518 - 4315482
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaata 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  4315518 aagctaaaactaactaaactgaattactaaaccaata 4315482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 32813127 - 32813091
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaata 245  Q
    |||||||||||||||||||||||||||||||| ||||    
T  32813127 aagctaaaactaactaaactgaattactaaactaata 32813091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 11172016 - 11171985
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaac 240  Q
    ||||||||||||||||||||||||||||||||    
T  11172016 aagctaaaactaactaaactgaattactaaac 11171985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 27237767 - 27237725
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 63  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  27237767 agagatatgagtaaaagacttgtg-aaatttattgaatgaattg 27237725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 7501317 - 7501560
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | ||||||||||||    
T  7501317 agagatatgagtaaaagacttgtgtaattttattgaatgaattgttatctatttacaacacatgagtgagtatataaacaactgggcgttgtaacaaact 7501416  T
Q  120 cctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgct------------------tctaaagacatcagaaattgt 201  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||                  ||| |||||||||||| ||||    
T  7501417 cctctaacaaactaactatcttggttaacacgctaaccaaggtttgttactagactctgcttgtgaagacatcagaagctctgaagacatcagaagttgt 7501516  T
Q  202 acttcagaagctaaaactaactaaactgaattactaaaccaata 245  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  7501517 acttcagaagctaaaactaactaaactgaattactaaagcaata 7501560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 31888677 - 31888483
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaatt-gtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaac 118  Q
    |||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| || || || |||||||||||    
T  31888677 agagatatgagtaaaagaattgtgtaattttattgaataaaatcgtcatctatttacaacacatgagtgagtatatatacaattgcacgttgtaacaaac 31888578  T
Q  119 tcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaattgtacttcagaagct 213  Q
    | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||  || |||| |||||||    
T  31888577 ttctctaacaaactaactaccttagttaacacgctaaccaaggtttgttactagactatgcttctgaagacatcagaagctgcactttagaagct 31888483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 28249353 - 28249226
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  28249353 tatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaaggtttgtta 28249254  T
Q  169 ctagactctgcttctaaagacatcagaa 196  Q
    |||||| |||||||| ||||||||||||    
T  28249253 ctagaccctgcttctgaagacatcagaa 28249226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 367474 - 367548
Alignment:
Q  218 ctaactaaactgaattactaaaccaatacacctccttaattcatttagttagatgcttcagccattcctaacttc 292  Q
    ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  367474 ctaactaaaatgaattacttaatcaatacacctccttaattcatttagttagatgcttcagccattcccaacttc 367548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 31888366 - 31888329
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaatac 246  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31888366 aagctaaaactaactaaactgaattactaaaccaatac 31888329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 22582288 - 22582480
Alignment:
Q  22 agatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaactcc 121  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  22582288 agatatgagtaaaaggcttgtgtaattttattgaatgaattctcatttatttacaacacatgagtgagtatatatacaactggacgttgtaccaaactcc 22582387  T
Q  122 tctaacaaactaactaccttggttaacacgctaaccaaggtttattactagact---ctgcttctaaagacatcagaaattgtacttcagaag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| | |||||||||||| ||||||||||||||    
T  22582388 tctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgctgcttttgaagacatcagaagttgtacttcagaag 22582480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 45937960 - 45937828
Alignment:
Q  81 atgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgct 180  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45937960 atgagtgagtatatatacaactggacgttgtaacaaactcctctaactaactaactaccttggttaacacgctaaccaaggtttattactagaccctgct 45937861  T
Q  181 tctaaagacatcagaaattgtacttcagaagct 213  Q
    | | ||||||||| ||  || ||||||||||||    
T  45937860 tttgaagacatcaaaagctgcacttcagaagct 45937828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 297193 - 297081
Alignment:
Q  84 agtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttct 183  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||    
T  297193 agtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttgttactaaactcagtttct 297094  T
Q  184 aaagacatcagaa 196  Q
     ||||||||||||    
T  297093 gaagacatcagaa 297081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 293308 - 293191
Alignment:
Q  76 aacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagact 175  Q
    |||| ||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||    
T  293308 aacatatgagtgagtatatatacaactagacgttgtaacaaacccctctaacaaactaactaccttggttaacacgctaaccaatgtttgttactaaact 293209  T
Q  176 ctgcttctaaagacatca 193  Q
    | | |||| |||||||||    
T  293208 cagtttctgaagacatca 293191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 35323971 - 35324014
Alignment:
Q  20 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35323971 agagatatgagtaaaagacttgtgtaattttattgaatgaattg 35324014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 22582548 - 22582580
Alignment:
Q  213 taaaactaactaaactgaattactaaaccaata 245  Q
    |||||||||||||||||||||||||||||||||    
T  22582548 taaaactaactaaactgaattactaaaccaata 22582580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 35324170 - 35324206
Alignment:
Q  209 aagctaaaactaactaaactgaattactaaaccaata 245  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  35324170 aagctaaaattaactaaactgaaatactaaaccaata 35324206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 11096308 - 11096136
Alignment:
Q  22 agatatgagtaaaagacttgtgtaattttattgaatgaattgtcatctatttacaacacatgagtgagtatatatataactggacattgtaacaaactcc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||    
T  11096308 agatatgagtaaaagacttgtgtaattttattgaatgaattgtcatatatttacaacacatgagtgagtatatatacaactgaacgttgtaacaaactcc 11096209  T
Q  122 tctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaa 196  Q
    ||||||||||||||||||||| |||||||||||||||| |||| |||||||||||  ||||| ||||||||||||    
T  11096208 tctaacaaactaactaccttgattaacacgctaaccaaagtttgttactagactc--cttctgaagacatcagaa 11096136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 37186788 - 37186932
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||  || |||| ||||||||    
T  37186788 tatttacaacacatgagtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaactaccctggttaacactatagccaatgtttatta 37186887  T
Q  169 ctagactctgcttctaaagacatcagaaattgtacttcagaagct 213  Q
    ||||||||||||||||||||||||||||  || ||||||||||||    
T  37186888 ctagactctgcttctaaagacatcagaagctgcacttcagaagct 37186932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 37786581 - 37786705
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||  |||    
T  37786581 tatttacaacacatgagtgaatatatatacaactggacgttgtaacaaagtcctctaacaaactaactaccctggttaacacgctaaccaaggttggtta 37786680  T
Q  169 ctagactctgcttctaaagacatca 193  Q
    ||||||||||||| | |||||||||    
T  37786681 ctagactctgcttatgaagacatca 37786705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 37791182 - 37791296
Alignment:
Q  99 aactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttattactagactctgcttctaaagacatcagaaat 198  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||  |||||| ||||||||||| ||||||||||||      
T  37791182 aactgaacgttgtaacaaactcctctaacaaactaactaccttggttaacatgctaatcaaggttggttacta-actctgcttctgaagacatcagaagc 37791280  T
Q  199 tgtacttcagaagcta 214  Q
    || || ||||||||||    
T  37791281 tgcacatcagaagcta 37791296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 14685281 - 14685248
Alignment:
Q  212 ctaaaactaactaaactgaattactaaaccaata 245  Q
    ||||||||||||||||||||||||||||||||||    
T  14685281 ctaaaactaactaaactgaattactaaaccaata 14685248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 11096116 - 11096073
Alignment:
Q  202 acttcagaagctaaaactaactaaactgaattactaaaccaata 245  Q
    |||||||||| |||||||||||||||||||||| |||| |||||    
T  11096116 acttcagaagttaaaactaactaaactgaattattaaatcaata 11096073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 49515 - 49388
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  49515 tatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaactaccttggttaacacgctaaccaaggtttgtta 49416  T
Q  169 ctagactctgcttctaaagacatcagaa 196  Q
    |||||| |||||||| ||||||||||||    
T  49415 ctagaccctgcttctgaagacatcagaa 49388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 44541359 - 44541486
Alignment:
Q  69 tatttacaacacatgagtgagtatatatataactggacattgtaacaaactcctctaacaaactaactaccttggttaacacgctaaccaaggtttatta 168  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||  |||    
T  44541359 tatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactaccctggttaacacactaatcaaggttggtta 44541458  T
Q  169 ctagactctgcttctaaagacatcagaa 196  Q
     |||||| ||||||| |||||| |||||    
T  44541459 ttagactatgcttctgaagacaacagaa 44541486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 28451021 - 28451093
Alignment:
Q  242 aatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaagttgct 315  Q
    ||||||||||||||||||| ||||||||   ||||| |||||||||  || ||| ||||||| |||||||||||    
T  28451021 aatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct 28451093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University