View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20531_high_4 (Length: 404)
Name: NF20531_high_4
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20531_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 34689954 - 34689553
Alignment:
| Q |
1 |
tgttattagtacccccaagataatcaattgaaattttttgtaccttatgtatatagccaaatgacac--cagattccccatccaccttttgtccacaatg |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34689954 |
tgttattagtacccccaagataatcaattgaaattttttgtaccttatgtatatagccaaatgacacaccagattccccatccaccttttgtccacaatg |
34689855 |
T |
|
| Q |
99 |
tatacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaattaagtattaatatnnnnnnnnnnnnnnnnnn |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34689854 |
tatacaaatgcctccaaatgatccaggatgcatacatccatctacattcacagatgatactccaacaattaagtattaatatagagagagtgagagaaag |
34689755 |
T |
|
| Q |
199 |
nnnnnnttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34689754 |
agagagttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagc |
34689655 |
T |
|
| Q |
299 |
ctttagaaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttct |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34689654 |
ctttagaaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttct |
34689555 |
T |
|
| Q |
399 |
ct |
400 |
Q |
| |
|
|| |
|
|
| T |
34689554 |
ct |
34689553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 26987906 - 26987504
Alignment:
| Q |
1 |
tgttattagtacccc-caagataatcaattgaaattttttgtaccttatgtatatagccaaatgacac--cagattccccatccaccttttgtccacaat |
97 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
26987906 |
tgttattagtaccccgcaagataatcattagaaaaaaattgtaccttatgtatatacccaaatgacacaccagattccccatccaccttttgtccacaat |
26987807 |
T |
|
| Q |
98 |
gtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaattaagtattaatatnnnnnnnnnnnnnnnnn |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
26987806 |
gtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcacagatgatactccaacaattaagtattaatatagagagagtgagagaaa |
26987707 |
T |
|
| Q |
198 |
nnnnnnnttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagag |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
26987706 |
gtgagagttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaatatttggaagagattttgcgtaatctaagag |
26987607 |
T |
|
| Q |
298 |
cctttagaaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26987606 |
cctttagaaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttc |
26987507 |
T |
|
| Q |
398 |
tct |
400 |
Q |
| |
|
||| |
|
|
| T |
26987506 |
tct |
26987504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 223 - 400
Target Start/End: Original strand, 27077617 - 27077797
Alignment:
| Q |
223 |
agagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagcctttagaaataaatttacggtatt |
322 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
27077617 |
agagtgacaaaattgtatgtgattcataatcatattttcataaacatttgaaa-agattttgcataatgtaagagcctttagaaataaatttacggtatt |
27077715 |
T |
|
| Q |
323 |
gttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattg----tgcatgcatcattagttcatttctct |
400 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||| ||||||| | |||||| || |||||||||||||||||||||||||| |
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|
| T |
27077716 |
gttataaaatggaccaaagaaaatgtagtatgtggtgtgagaaatttgagtgtgcatgcatgcatcattagttcatttctct |
27077797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 27027382 - 27027235
Alignment:
| Q |
1 |
tgttattagtacccc-caagataatcaattgaaattttttgtaccttatgtatatagccaaatgacac--cagattccccatccaccttttgtccacaat |
97 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||| |
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|
| T |
27027382 |
tgttattagtaccccgcaagataatcattagaaaaaaattgtaccttatgtatatacccaaatgacacaccagattccgcatccaccttttgcccacaat |
27027283 |
T |
|
| Q |
98 |
gtatacaaatgcctccaaatgatccaggatgcatacatccatctacat |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27027282 |
gtatacaaatgcctccaaatgatccaggatgcatacatccatctacat |
27027235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 27077380 - 27077556
Alignment:
| Q |
1 |
tgttattagtaccccc-aagataatcaattgaaattttttgtaccttatgtatatagccaaatgacac--cagattccccatccaccttttgtccacaat |
97 |
Q |
| |
|
||||||||||||||| |||||||||| | |||| |||||||||| | ||||| ||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
27077380 |
tgttattagtaccccgtaagataatcattagaaacaatttgtaccttgcgaatatacccaaatgacacaccagattccccatccaccttttgcccacaat |
27077479 |
T |
|
| Q |
98 |
gtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaattaagtat |
174 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
27077480 |
gtatacaaatgcctccaaatgatccagggtgcatgcatacatctacattcacagatgacactgcaacaattaagtat |
27077556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 296
Target Start/End: Complemental strand, 27027201 - 27027111
Alignment:
| Q |
205 |
ttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaaga |
296 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||| |
|
|
| T |
27027201 |
ttacaacattttaaagacagagtgacaaagttgtatgttattcatattcatattttcacaaatattt-gaaaagattttgcataatctaaga |
27027111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 27027114 - 27027053
Alignment:
| Q |
339 |
aagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttctct |
400 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27027114 |
aagaaaaggtagtatggggtgtgcgatatttgattgcgcatgcatcattagttcatttctct |
27027053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 205 - 400
Target Start/End: Complemental strand, 30232785 - 30232591
Alignment:
| Q |
205 |
ttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagcctttag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
30232785 |
ttacaacatttttaagacagagtgacaaagttgtatgtgattcataataatattttcacaaacatttgaaa-agattttgcataatctaagagcctttag |
30232687 |
T |
|
| Q |
305 |
aaataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttctct |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30232686 |
aaatcaatttacggtattgttatacaatggactaaagaaaatgtagtatgaggtgtgagatatttgattgtgcatgcatcattagttcatttctct |
30232591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 223 - 400
Target Start/End: Complemental strand, 30230055 - 30229880
Alignment:
| Q |
223 |
agagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagcctttagaaataaatttacggtatt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||||||||| | | | |||||||| ||||||| |
|
|
| T |
30230055 |
agagtgacaaagttgtatgtgattcataatcatattttcacaaaaatttcaaa-agattttgcataatctaagagccat-atatataaatttgcggtatt |
30229958 |
T |
|
| Q |
323 |
gttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattgtgcatgcatcattagttcatttctct |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30229957 |
tttatacaatggaccaaagaaaaggtagtatgaggtgtgcgatatttgattgtgcatgcataattagttcatttctct |
30229880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 30232990 - 30232808
Alignment:
| Q |
3 |
ttattagtacccccaagataatcaattgaaattttttgtaccttatgtatatagccaaatgacac--cagattccccatccaccttttgtccacaatgta |
100 |
Q |
| |
|
||||||||| |||||||||||||| | |||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
30232990 |
ttattagtatccccaagataatcattagaaacaatttgtaccttgtgtatatagccaaataacacaccagattccccatccaccttttgcccacaatgta |
30232891 |
T |
|
| Q |
101 |
tacaaatgcctccaaatgatccaggatg---catacatccatctacattcaaagatgatactccaacaattaagtattaatat |
180 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||| |||||||| |||||| |
|
|
| T |
30232890 |
tacaaatgcctccaaatgatccaggatgcatcatacatccatctacattcacagttgatactgcaatcattaagtaataatat |
30232808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 30230237 - 30230099
Alignment:
| Q |
41 |
taccttatgtatatagccaaatgacac--cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatcca |
138 |
Q |
| |
|
|||||| |||||||| ||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30230237 |
taccttgtgtatatacccaaacgacacaccagattccccatcaaccttttgcccacaatgtatacaaatgcctccaaatgatccaggatgcgtacatcca |
30230138 |
T |
|
| Q |
139 |
tctacattcaaagatgatactccaacaattaagtattaa |
177 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
30230137 |
tctacattcacagatgatactgcaacaattaagtattaa |
30230099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 50174676 - 50174785
Alignment:
| Q |
41 |
taccttatgtatatagccaaatgacac--cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatcca |
138 |
Q |
| |
|
|||||| ||||| || ||||||| ||| ||||||||||||||| |||||| || ||| ||||||| || |||||||||| |||||||| ||||| || |
|
|
| T |
50174676 |
taccttgtgtatgtacccaaatgtcacgccagattccccatccaacttttgcccgcaacgtatacacatctctccaaatgaaccaggatgtgtacataca |
50174775 |
T |
|
| Q |
139 |
tctacattca |
148 |
Q |
| |
|
||||| |||| |
|
|
| T |
50174776 |
tctaccttca |
50174785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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