View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20531_high_8 (Length: 351)
Name: NF20531_high_8
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20531_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 9603147 - 9603486
Alignment:
| Q |
1 |
tgattatgatgtctacaatgatcttggtgatccagatgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9603147 |
tgattatgatgtctacaatgatcttggtgatccagatgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagg |
9603246 |
T |
|
| Q |
101 |
gttagaagtggtcgaaaaccaactaaaaagggtaaannnnnnnnnnnnnnnnnntttcatatactttaaagactaaatatgagagacaataatgcggttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9603247 |
gttagaagtggtcgaaaaccaactaaaaagggtaaaaaaaaatattaat-----tttcatatactttaaagactaaatatgagagacaataatgcggttc |
9603341 |
T |
|
| Q |
201 |
taatgatattttattgttgacagatcctaaaagtgagggaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9603342 |
taatgatattttattgttgacagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttc |
9603441 |
T |
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| Q |
301 |
cttacatatggaataaaatcattttctcaagaggtgttacctttg |
345 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
9603442 |
cttacatatggaataaaatcattgtctcaagatgtgttacctttg |
9603486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 9589103 - 9589164
Alignment:
| Q |
261 |
aagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaatcat |
322 |
Q |
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| T |
9589103 |
aagagatgaaaattttggtcacttaaagtcatcagacttccttacatacggattaaaatcat |
9589164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 330
Target Start/End: Complemental strand, 6458065 - 6457955
Alignment:
| Q |
220 |
acagatcctaaaagtgagggaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaat |
319 |
Q |
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||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |
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| T |
6458065 |
acagatcctaagagtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaat |
6457966 |
T |
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| Q |
320 |
cattttctcaa |
330 |
Q |
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|| | |||||| |
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| T |
6457965 |
cactgtctcaa |
6457955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 345
Target Start/End: Complemental strand, 6451975 - 6451850
Alignment:
| Q |
220 |
acagatcctaaaagtgagggaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaat |
319 |
Q |
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||||||| ||| |||||| ||| |||| || |||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| | |
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| T |
6451975 |
acagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaagt |
6451876 |
T |
|
| Q |
320 |
cattttctcaagaggtgttacctttg |
345 |
Q |
| |
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|||| || ||||| || || |||||| |
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|
| T |
6451875 |
cattgtcacaagacgttttgcctttg |
6451850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 6452146 - 6452071
Alignment:
| Q |
50 |
cttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaacta |
125 |
Q |
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|||| |||||| |||||||||| |||||||| ||||| |||||||| |||||||||| |||| |||||||||||| |
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| T |
6452146 |
cttgttcgtccaatccttggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaacta |
6452071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 6458233 - 6458166
Alignment:
| Q |
56 |
cgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaac |
123 |
Q |
| |
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| T |
6458233 |
cgtcctgtccttgggggatcaagcacctatccctaccctcgcagggttagaagtggtagaaaaccaac |
6458166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 42687709 - 42687776
Alignment:
| Q |
253 |
tatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaatc |
320 |
Q |
| |
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| T |
42687709 |
tatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatc |
42687776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 42687290 - 42687340
Alignment:
| Q |
51 |
ttgctcgtccggtccttggagggtctagcactcatccttaccctcgaaggg |
101 |
Q |
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||||||| || || ||||||||||||||||| |||||||||||||| |||| |
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| T |
42687290 |
ttgctcgccctgttcttggagggtctagcacacatccttaccctcgcaggg |
42687340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35722351 - 35722383
Alignment:
| Q |
1 |
tgattatgatgtctacaatgatcttggtgatcc |
33 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
35722351 |
tgattatgatgtctacaatgatcttggagatcc |
35722383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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