View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20531_high_9 (Length: 336)
Name: NF20531_high_9
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20531_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 6738356 - 6738658
Alignment:
| Q |
19 |
atttcgtactcttttttgataatttttactatgtgaatgaaattctggaaaatatgtagtacaaatagagtattgctcaagtgtggttggaccaataatt |
118 |
Q |
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| T |
6738356 |
atttcgtactcttttttgataatttttactatgtgaatgaaattctggaaaat-tgtagtacaaatagagtattgctcaagtgtggttggaccaataatt |
6738454 |
T |
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| Q |
119 |
atatgttgtttatatgtatatgcatgctagtggtgactaatgcctttgtcaccattgttttggttggttggtttgaacgttcaagtgtggttagagtgct |
218 |
Q |
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| T |
6738455 |
atatgttgtttatatgtatatgcatgctagtggtgactaatgcctttgtcaccattgttttggttggttggtttgaatgttcaagtgtggttaaagtgct |
6738554 |
T |
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| Q |
219 |
tgtttgcgtcatttacataccataaatttaaactgttatatctgaagttttcttccgcctttgtgcaaagactttgcgtagtttaaaaacctaaatttgt |
318 |
Q |
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| T |
6738555 |
tgtttgcgtcatttacataccataaatttaaactgttatgtctgaagttttcttctgcctttgtgcaaagactttgcgtagtttaaaaacctaaatttgt |
6738654 |
T |
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| Q |
319 |
tcat |
322 |
Q |
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|||| |
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| T |
6738655 |
tcat |
6738658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 33 - 322
Target Start/End: Complemental strand, 367918 - 367624
Alignment:
| Q |
33 |
tttgataatttttactatgtgaatgaaattctggaaaatatgtagtacaaatagagtattgctcaagtgtggttggaccaataattatatgttgtttata |
132 |
Q |
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| T |
367918 |
tttgataatttttactatgtgaatgaaattctggtaaatatgtaggacaaatagagtattgctcaagtgtggttggatcaataattatatgttgtttata |
367819 |
T |
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| Q |
133 |
tgtatatgcatgctagt---ggtgactaatgcctttgtcaccattgttttggttggttggtttgaacgttcaagtgtggttagagtgcttgtttgcgtca |
229 |
Q |
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| T |
367818 |
tgtatatgaattttagtggcggcggctaatgcctttgtcaccattgttttggttgcctggtttgaatgttcaagtgtggctggagtgcttgcttgcttta |
367719 |
T |
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| Q |
230 |
tttacataccataaatttaaac--tgttatatctgaagttttcttccgcctttgtgcaaagactttgcgtagtttaaaaacctaaatttgttcat |
322 |
Q |
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| T |
367718 |
tttacataccataaatttaaactatgttatgtctgaagttttcttctgcctttgtgtgaagattttgtttagtctaaaaacctaattttgttcat |
367624 |
T |
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