View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20531_low_10 (Length: 326)

Name: NF20531_low_10
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20531_low_10
NF20531_low_10
[»] chr7 (20 HSPs)
chr7 (1-152)||(18948171-18948322)
chr7 (13-158)||(18947280-18947425)
chr7 (11-152)||(43702722-43702863)
chr7 (185-241)||(6746706-6746762)
chr7 (180-242)||(15749084-15749146)
chr7 (180-242)||(38505469-38505531)
chr7 (180-241)||(7667299-7667361)
chr7 (180-241)||(3658646-3658707)
chr7 (180-241)||(33406767-33406828)
chr7 (52-113)||(35753033-35753094)
chr7 (180-231)||(3571894-3571945)
chr7 (180-239)||(46745721-46745780)
chr7 (87-153)||(46294640-46294706)
chr7 (153-241)||(36747181-36747270)
chr7 (177-226)||(43188770-43188819)
chr7 (180-225)||(46449076-46449121)
chr7 (36-124)||(48204924-48205013)
chr7 (41-153)||(18332804-18332916)
chr7 (180-208)||(24924738-24924766)
chr7 (180-224)||(42113092-42113136)
[»] chr2 (32 HSPs)
chr2 (154-310)||(41656750-41656901)
chr2 (18-148)||(6204511-6204641)
chr2 (180-241)||(4003313-4003374)
chr2 (180-242)||(11514928-11514990)
chr2 (180-242)||(16519223-16519285)
chr2 (180-242)||(16625916-16625978)
chr2 (19-153)||(20268121-20268255)
chr2 (52-152)||(33361751-33361851)
chr2 (53-152)||(16871513-16871611)
chr2 (180-242)||(6656002-6656064)
chr2 (180-242)||(32761409-32761471)
chr2 (180-226)||(38293784-38293830)
chr2 (180-241)||(18780267-18780328)
chr2 (79-152)||(20268028-20268101)
chr2 (180-241)||(31550384-31550445)
chr2 (52-153)||(34229043-34229144)
chr2 (253-310)||(43223702-43223758)
chr2 (23-139)||(10148553-10148669)
chr2 (52-152)||(39063805-39063905)
chr2 (164-234)||(37201733-37201804)
chr2 (180-242)||(11522301-11522363)
chr2 (180-234)||(12964107-12964161)
chr2 (180-241)||(14008462-14008524)
chr2 (180-242)||(15555480-15555542)
chr2 (180-226)||(30312540-30312586)
chr2 (17-123)||(31139577-31139683)
chr2 (180-242)||(39180964-39181025)
chr2 (184-242)||(39750042-39750100)
chr2 (180-241)||(18018731-18018792)
chr2 (180-225)||(18826367-18826412)
chr2 (52-156)||(34173828-34173932)
chr2 (35-103)||(39062851-39062919)
[»] chr3 (28 HSPs)
chr3 (18-150)||(46461865-46461996)
chr3 (42-152)||(39232257-39232367)
chr3 (16-152)||(34936715-34936851)
chr3 (35-153)||(8923577-8923696)
chr3 (150-242)||(3537092-3537184)
chr3 (180-226)||(42583406-42583452)
chr3 (180-242)||(53620173-53620235)
chr3 (180-241)||(2420550-2420611)
chr3 (180-242)||(32858713-32858777)
chr3 (39-152)||(39229402-39229515)
chr3 (180-241)||(47789581-47789642)
chr3 (180-241)||(49183577-49183638)
chr3 (180-225)||(55439485-55439530)
chr3 (72-152)||(40809579-40809659)
chr3 (41-103)||(7267445-7267508)
chr3 (180-234)||(17642482-17642536)
chr3 (180-242)||(18257807-18257869)
chr3 (180-242)||(35282973-35283034)
chr3 (35-152)||(41326491-41326608)
chr3 (38-103)||(50107617-50107683)
chr3 (180-242)||(1133059-1133123)
chr3 (180-242)||(29623120-29623184)
chr3 (180-225)||(33982854-33982899)
chr3 (180-225)||(36796324-36796369)
chr3 (17-154)||(40613733-40613870)
chr3 (180-225)||(41962110-41962155)
chr3 (72-153)||(55444569-55444650)
chr3 (25-109)||(17057146-17057230)
[»] chr5 (18 HSPs)
chr5 (41-152)||(29984783-29984894)
chr5 (52-144)||(19778730-19778822)
chr5 (53-152)||(33529736-33529834)
chr5 (180-242)||(10437870-10437932)
chr5 (180-242)||(35683608-35683670)
chr5 (180-241)||(3676644-3676705)
chr5 (180-241)||(5772854-5772915)
chr5 (180-241)||(35700945-35701006)
chr5 (153-225)||(41694878-41694950)
chr5 (180-231)||(1176067-1176118)
chr5 (180-231)||(38928837-38928888)
chr5 (42-152)||(43379443-43379553)
chr5 (180-225)||(2020882-2020927)
chr5 (53-154)||(3635493-3635594)
chr5 (180-225)||(4649122-4649167)
chr5 (180-241)||(18670918-18670979)
chr5 (180-225)||(38302488-38302533)
chr5 (180-240)||(35704596-35704656)
[»] chr4 (21 HSPs)
chr4 (180-242)||(16318501-16318563)
chr4 (180-241)||(7182326-7182387)
chr4 (52-152)||(39310396-39310496)
chr4 (82-152)||(9483662-9483732)
chr4 (180-241)||(24279799-24279860)
chr4 (180-229)||(56426843-56426892)
chr4 (153-241)||(52594732-52594820)
chr4 (52-147)||(24484788-24484883)
chr4 (180-226)||(13270408-13270454)
chr4 (180-242)||(33500404-33500466)
chr4 (180-234)||(38317364-38317418)
chr4 (180-226)||(47669708-47669754)
chr4 (180-242)||(52636645-52636707)
chr4 (180-241)||(16535576-16535637)
chr4 (52-153)||(31414816-31414917)
chr4 (72-153)||(32159510-32159591)
chr4 (180-241)||(38365914-38365975)
chr4 (180-241)||(41363947-41364008)
chr4 (180-241)||(46177062-46177123)
chr4 (180-225)||(48830950-48830995)
chr4 (161-241)||(16422804-16422883)
[»] chr8 (24 HSPs)
chr8 (20-86)||(2581193-2581259)
chr8 (180-242)||(3635611-3635673)
chr8 (30-152)||(42503868-42503990)
chr8 (180-241)||(3404708-3404769)
chr8 (53-146)||(39309638-39309731)
chr8 (183-242)||(23962885-23962943)
chr8 (53-152)||(39308668-39308767)
chr8 (9-146)||(30146989-30147127)
chr8 (180-241)||(1942168-1942228)
chr8 (52-113)||(42578748-42578809)
chr8 (36-103)||(10910965-10911033)
chr8 (38-124)||(38443062-38443149)
chr8 (94-153)||(43235430-43235489)
chr8 (180-226)||(6718-6764)
chr8 (180-226)||(4734631-4734677)
chr8 (180-242)||(21173992-21174054)
chr8 (180-242)||(26772776-26772838)
chr8 (179-225)||(29611893-29611939)
chr8 (180-242)||(31149808-31149870)
chr8 (180-226)||(36906087-36906133)
chr8 (180-233)||(37659666-37659719)
chr8 (30-147)||(42503031-42503148)
chr8 (181-225)||(1840341-1840385)
chr8 (41-152)||(41889323-41889435)
[»] chr6 (6 HSPs)
chr6 (180-242)||(1567165-1567227)
chr6 (180-242)||(26713747-26713809)
chr6 (180-241)||(2365732-2365793)
chr6 (54-153)||(18065718-18065817)
chr6 (180-241)||(26481262-26481323)
chr6 (180-226)||(26574530-26574576)
[»] chr1 (22 HSPs)
chr1 (180-242)||(36886754-36886816)
chr1 (180-242)||(52073582-52073645)
chr1 (180-242)||(36269627-36269689)
chr1 (180-241)||(26940491-26940552)
chr1 (180-233)||(27499877-27499930)
chr1 (180-241)||(43572086-43572147)
chr1 (189-241)||(39179250-39179302)
chr1 (180-240)||(50586934-50586994)
chr1 (181-240)||(13061536-13061595)
chr1 (180-223)||(42488762-42488805)
chr1 (180-226)||(1688351-1688397)
chr1 (179-241)||(11017484-11017546)
chr1 (180-242)||(17556552-17556614)
chr1 (180-226)||(17688238-17688284)
chr1 (79-153)||(18526899-18526973)
chr1 (180-242)||(25708500-25708562)
chr1 (180-242)||(49103086-49103148)
chr1 (180-226)||(50476446-50476492)
chr1 (180-241)||(12293695-12293756)
chr1 (180-225)||(23871598-23871643)
chr1 (180-241)||(40707333-40707394)
chr1 (180-241)||(47905824-47905885)
[»] scaffold1163 (1 HSPs)
scaffold1163 (152-242)||(1942-2032)
[»] scaffold0151 (1 HSPs)
scaffold0151 (41-98)||(20794-20851)
[»] scaffold0136 (1 HSPs)
scaffold0136 (180-240)||(2157-2217)
[»] scaffold0330 (1 HSPs)
scaffold0330 (73-147)||(13231-13305)
[»] scaffold0036 (1 HSPs)
scaffold0036 (180-241)||(82680-82742)
[»] scaffold0952 (1 HSPs)
scaffold0952 (180-225)||(3807-3852)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 18948171 - 18948322
Alignment:
Q  1 gaggataggcgtgtgtttttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatcca 100  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18948171 gaggataggcgtgtgtttttgtttttcagtaaagaaatgttttttctaagccttttaatctcagccattaattttatatttgccacatgtcaaacatcca 18948270  T
Q  101 tgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactc 152  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  18948271 tgaagtgaaatggtataaatgaaggctccctaaatggagcaaagatgcactc 18948322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 18947425 - 18947280
Alignment:
Q  13 gtgtttttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatg 112  Q
    |||| |||||||| | ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  18947425 gtgtgtttattttccggtaaataaatgctttttctaagccttctaatctcaaccattggttttatatttgccacatgtccaacatctatgaagtgaaatg 18947326  T
Q  113 gtataaatggaggctccccaaatggagcaaagatgcactcccaaaa 158  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  18947325 gtataaatggaggctccctaaatggagcaaagatgcactccaaaaa 18947280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 43702863 - 43702722
Alignment:
Q  11 gtgtgtttttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaa 110  Q
    |||||| |||||||||| |||||  |||| ||||||||| | ||||| |||||| ||||  |||||| |||||||||| | ||||||| ||||||||||     
T  43702863 gtgtgtgtttatttttcggtaaaataatgttttttctaaacattttactctcagtcatttattttatttttgccacatatgaaacatctatgaagtgaat 43702764  T
Q  111 tggtataaatggaggctccccaaatggagcaaagatgcactc 152  Q
    | |||||||||||||||||  |||||||||||||||||||||    
T  43702763 ttgtataaatggaggctccttaaatggagcaaagatgcactc 43702722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 6746706 - 6746762
Alignment:
Q  185 cttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||    
T  6746706 cttccacttgctcattccttttttccaaatccctcccctcacttcccctctaaactc 6746762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 15749084 - 15749146
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || ||||||||||||||||| |||||||    
T  15749084 tatttcttccacttgctcattccttttttcctaagccttcccctcccttcccctccaaactcg 15749146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 38505469 - 38505531
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || ||||||||||||||||| |||||||    
T  38505469 tatttcttccacttgctcattccttttttcccaagccttcccctcccttcccctccaaactcg 38505531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 7667299 - 7667361
Alignment:
Q  180 tatttcttccacttgctcatt-tcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||||||||||||||| | |||||| |||| |||||||||||| ||||||| ||||||    
T  7667299 tatttcttccacttgctcattctattttttccaaaaccctcccctcccctcccctccaaactc 7667361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 3658646 - 3658707
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||| ||| |||| |||||||||||| ||||||| ||||||    
T  3658646 tatttcttccacttgctccttccttctttccaaaaccctcccctcccctcccctccaaactc 3658707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 33406767 - 33406828
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || |||||||  ||| |||||||||||| ||||||| ||||||    
T  33406767 tatttcttccacttgctccttccttttttttaaaaccctcccctcccctcccctccaaactc 33406828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 35753033 - 35753094
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatgg 113  Q
    ||||||||| ||||||||  |||||| |||||||||||||| ||||| |||| |||||||||    
T  35753033 cttttaatcacagccattgattttatttttgccacatgtcatacatctatgacgtgaaatgg 35753094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 3571894 - 3571945
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttccc 231  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||| ||||    
T  3571894 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccc 3571945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 46745721 - 46745780
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaac 239  Q
    ||||| |||||||||||| || ||||||| |||| |||||||||||| ||||||| ||||    
T  46745721 tattttttccacttgctccttccttttttccaaaaccctcccctcccctcccctccaaac 46745780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 46294706 - 46294640
Alignment:
Q  87 atgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactcc 153  Q
    |||||| ||||| ||||||| ||| || |||||||||| ||   |||||||||||||||||||||||    
T  46294706 atgtcacacatctatgaagtaaaaagggataaatggagcctttgcaaatggagcaaagatgcactcc 46294640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 36747270 - 36747181
Alignment:
Q  153 ccaaaacgctccccttccattatctcatatttcttccacttgctcatttcttttttac-aaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||| ||| ||||||| | |||  |||||||||||||||||| ||  |||||| | ||| |||||||||||| ||||||| ||||||    
T  36747270 ccaaaaccctctccttccaatgtcttctatttcttccacttgctccttcatttttttccaaaaccctcccctcccctcccctccaaactc 36747181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 43188819 - 43188770
Alignment:
Q  177 tcatatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    ||||||||||||| ||||||| || ||||||| |||| ||||||||||||    
T  43188819 tcatatttcttccccttgctccttccttttttccaaaaccctcccctccc 43188770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 46449121 - 46449076
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    ||||||||||||||||||||| ||||||| |||| |||| ||||||    
T  46449121 tatttcttccacttgctcattccttttttccaaaaccctgccctcc 46449076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 48204924 - 48205013
Alignment:
Q  36 aatgctttttctaagccttttaatctcagccattagttttatattt-gccacatgtcaaacatccatgaagtgaaatggtataaatggag 124  Q
    |||| |||||| || |||||||||| ||||| ||  |||| ||||| ||||||||||| |||||||||| |  ||||||| |||||||||    
T  48204924 aatgttttttccaacccttttaatcccagcccttgattttttattttgccacatgtcacacatccatgatggtaaatggtgtaaatggag 48205013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 18332804 - 18332916
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagc 140  Q
    |||| |||| |||||||||||| | | || ||| ||| || ||||||||||| ||||||| ||||  |||  |  |||||||||| || | |||||||||    
T  18332804 ttttactaaaccttttaatctcggtctttggttctattttagccacatgtcacacatccaagaagcaaaaaagagtaaatggaggttctctaaatggagc 18332903  T
Q  141 aaagatgcactcc 153  Q
    ||||||| |||||    
T  18332904 aaagatggactcc 18332916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 24924738 - 24924766
Alignment:
Q  180 tatttcttccacttgctcatttctttttt 208  Q
    |||||||||||||||||||||||||||||    
T  24924738 tatttcttccacttgctcatttctttttt 24924766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 42113092 - 42113136
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctc 224  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||    
T  42113092 tatttcttccacttgctccttccttttttccaaaaccctcccctc 42113136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 154 - 310
Target Start/End: Original strand, 41656750 - 41656901
Alignment:
Q  154 caaaacgctccccttccattatctcatatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcgnnnnnnnngcc 253  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||        |||    
T  41656750 caaaacgcttcccttccattgtctcctatttcttccacttgctcatttcttttttacaaatccctc----cccttcccctcaaaactcg-aaaaaaagcc 41656844  T
Q  254 taaggaggtaacatgcatgacactagaaaggctttaagttttaaccgaggtttttat 310  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41656845 taaggaggtaacatgcatgacactacaaaggctttaagttttaaccgaggtttttat 41656901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 6204641 - 6204511
Alignment:
Q  18 tttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtata 117  Q
    |||||||| ||||||| ||||| |||||  || |||||||||||| ||||||  ||||||||||||||||||| |||||||  ||||||||| |||||||    
T  6204641 tttattttccagtaaacaaatgattttttaaaaccttttaatctctgccattgattttatatttgccacatgttaaacatctgtgaagtgaattggtata 6204542  T
Q  118 aatggaggctccccaaatggagcaaagatgc 148  Q
    ||||||||||||  |||||||||||||||||    
T  6204541 aatggaggctccttaaatggagcaaagatgc 6204511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 4003374 - 4003313
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||||||| ||| ||||||    
T  4003374 tatttcttccacttgctcattccttttttccaaagccctcccctcccttccactccaaactc 4003313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 11514990 - 11514928
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || ||||||||||||||||| |||||||    
T  11514990 tatttcttccacttgctcattccttttttcctaagccttcccctcccttcccctccaaactcg 11514928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 16519223 - 16519285
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||||||| || ||||||| |||| |||||||||| ||||||||| |||||||    
T  16519223 tatttcttccacttgctccttccttttttccaaaaccctcccctctcttcccctccaaactcg 16519285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 16625916 - 16625978
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||  | ||||||| |||| |||||||||||||||||||| |||||||    
T  16625916 tatttcttccacttgctccatccttttttccaaaaccctcccctcccttcccctccaaactcg 16625978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 20268255 - 20268121
Alignment:
Q  19 ttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataa 118  Q
    ||||| ||||||||| ||||||||||| |    ||||||||||||  | || | ||| | |||||||||||||| ||||| ||| | |||| ||||||||    
T  20268255 ttattattcagtaaacaaatgcttttttttcaacttttaatctcatactttgggtttgtttttgccacatgtcatacatcgatgcactgaactggtataa 20268156  T
Q  119 atggaggctccccaaatggagcaaagatgcactcc 153  Q
    |||||| |  || ||||||||||||| ||||||||    
T  20268155 atggagtcatcctaaatggagcaaagttgcactcc 20268121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 33361751 - 33361851
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcact 151  Q
    |||||||||||| || || | ||| | |||||||||||||| ||||| ||| | |||| |||||||||||||| |  || ||||||||||||| ||||||    
T  33361751 cttttaatctcatcctttgggtttgtttttgccacatgtcatacatcaatgcactgaactggtataaatggagtcatcctaaatggagcaaagttgcact 33361850  T
Q  152 c 152  Q
    |    
T  33361851 c 33361851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 16871513 - 16871611
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactc 152  Q
    |||||||||||||| || ||||||  ||||||||||||||  |||| ||||  |||||||| |||||| || ||| || |||||||||||||||| ||||    
T  16871513 ttttaatctcagcccttcgttttag-tttgccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatgaactc 16871611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 6656064 - 6656002
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| |  | || ||||||||||||||||| |||||||    
T  6656064 tatttcttccacttgctcattccttttttccttagccttcccctcccttcccctccaaactcg 6656002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 32761409 - 32761471
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||| ||||||||| || ||  ||||||||||| |||||||||||||||||||| |||||||    
T  32761409 tatttattccacttgatccttcattttttacaaagccctcccctcccttcccctccaaactcg 32761471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 38293830 - 38293784
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  38293830 tatttcttccacttgctcattccttttttccaaaaccctcccctccc 38293784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 18780328 - 18780267
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||| ||||| || ||||||| |||| |||||||||||| ||||||| ||||||    
T  18780328 tatttcttccacgtgctccttccttttttccaaaaccctcccctcccctcccctccaaactc 18780267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 20268028 - 20268101
Alignment:
Q  79 tttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactc 152  Q
    |||||||||||||| ||||| ||| | |||| |||||||||||||| |  || ||||||||||||| |||||||    
T  20268028 tttgccacatgtcatacatcgatgcactgaactggtataaatggagtcatcctaaatggagcaaagttgcactc 20268101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 31550384 - 31550445
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||| ||| ||| ||||||    
T  31550384 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccactccaaactc 31550445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 34229043 - 34229144
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcact 151  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||| ||||  | ||||||  ||||| ||||   |  |||||||||||||||| |||    
T  34229043 cttttaatctcagccattggttttattttttccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagcaaagatggact 34229142  T
Q  152 cc 153  Q
    ||    
T  34229143 cc 34229144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 43223758 - 43223702
Alignment:
Q  253 ctaaggaggtaacatgcatgacactagaaaggctttaagttttaaccgaggtttttat 310  Q
    |||||||||||||||| |||||||| ||| || |||||||||| ||||||||||||||    
T  43223758 ctaaggaggtaacatgtatgacacttgaa-ggttttaagttttgaccgaggtttttat 43223702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 10148553 - 10148669
Alignment:
Q  23 ttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatgg 122  Q
    |||||| |||| || || |||||| || | ||||||||||| || ||  |||||| ||| |||||||||| ||||||| | | ||||||||  |||||||    
T  10148553 ttttcattaaacaagtgttttttccaaactttttaatctcaacccttgattttatttttaccacatgtcacacatccaaggaatgaaatggggtaaatgg 10148652  T
Q  123 aggctccccaaatggag 139  Q
    ||||| || ||||||||    
T  10148653 aggcttcctaaatggag 10148669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 39063905 - 39063805
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcact 151  Q
    ||||||||| || |||||  ||||| ||||||||||||||| ||||| || ||||||||  | |||||| ||||   || |||||||||||||||| |||    
T  39063905 cttttaatcccaaccattgtttttacatttgccacatgtcatacatcaataaagtgaaaatgaataaattgaggaaacctaaatggagcaaagatggact 39063806  T
Q  152 c 152  Q
    |    
T  39063805 c 39063805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 37201733 - 37201804
Alignment:
Q  164 cccttccattatctcatatttcttccacttgctcatttc-ttttttacaaatccctcccctcccttcccctc 234  Q
    |||||||||||||   |||||||| ||||| |||||||| |||||| ||| | |||||||||||||||||||    
T  37201733 cccttccattatcctctatttctttcactttctcatttctttttttccaagttcctcccctcccttcccctc 37201804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 11522301 - 11522363
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||| || ||| || ||||||| |||| ||||||||||| |||||||| |||||||    
T  11522301 tatttcttccatttactccttcctttttttcaaaaccctcccctccattcccctccaaactcg 11522363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 12964107 - 12964161
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctc 234  Q
    |||||||||||||||||| || ||||||| |||| |||||||||| | |||||||    
T  12964107 tatttcttccacttgctccttccttttttccaaaaccctcccctctcctcccctc 12964161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 14008462 - 14008524
Alignment:
Q  180 tatttcttccacttgctcatt-tcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||| ||| || | |||||| |||| |||||||||||||||||||| ||||||    
T  14008462 tatttcttccacttactccttcttttttttccaaaaccctcccctcccttcccctccaaactc 14008524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 15555480 - 15555542
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | ||  | ||||||||||| ||||| |||||||    
T  15555480 tatttcttccacttgctcattccttttttcctaagtcttcccctccctttccctccaaactcg 15555542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 30312540 - 30312586
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||    
T  30312540 tatttcttccacttgctccttccttttttccaaaaccctcccctccc 30312586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 31139683 - 31139577
Alignment:
Q  17 ttttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtat 116  Q
    |||| ||||||| |||| || ||  |||| ||| ||||||||||||||||| | |||||||  |||| |||||||| ||||  |||||||||||  | ||    
T  31139683 ttttgtttttcattaaacaattgtattttttaaaccttttaatctcagccaatggttttattgttgcaacatgtcacacatatatgaagtgaaaaaggat 31139584  T
Q  117 aaatgga 123  Q
    |||||||    
T  31139583 aaatgga 31139577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 39181025 - 39180964
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||| ||| || ||||||| ||||| ||||||||||||||| ||| |||||||    
T  39181025 tatttcttccacttactccttccttttttccaaat-cctcccctcccttcctctccaaactcg 39180964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 39750100 - 39750042
Alignment:
Q  184 tcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||| ||||||| | || || |||||| |||||||||| |||||||    
T  39750100 tcttccacttgctcattccttttttcccaagccttccccttccttcccctccaaactcg 39750042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 18018731 - 18018792
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||| ||||||||  || ||||||| |||| |||||||||||| ||||||| ||||||    
T  18018731 tatttctttcacttgcttcttccttttttccaaaaccctcccctcccctcccctcgaaactc 18018792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 18826367 - 18826412
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||    
T  18826367 tatttcttccacttgctccttccttttttccaaaaccctcccctcc 18826412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 34173828 - 34173932
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcact 151  Q
    |||||||||||| |||||  ||||| ||||| ||||||||| ||||| || || ||||| || |||||| |||    || ||| |||||||||||| |||    
T  34173828 cttttaatctcaaccattgtttttacatttgtcacatgtcacacatcaataaaatgaaaaggaataaattgagaaaaccaaaagggagcaaagatggact 34173927  T
Q  152 cccaa 156  Q
    |||||    
T  34173928 cccaa 34173932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 39062851 - 39062919
Alignment:
Q  35 aaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatga 103  Q
    |||||||||||| || ||||||||||  |||||||  ||||||  ||||||||||||| ||||| ||||    
T  39062851 aaatgctttttccaaaccttttaatcctagccattgattttattgttgccacatgtcatacatctatga 39062919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 46461996 - 46461865
Alignment:
Q  18 tttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtata 117  Q
    ||||||||  |||||| ||||||||||||||| | |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||    
T  46461996 tttattttgtagtaaacaaatgctttttctaaac-ttttaatctcagccattgattttatatttgccacatgtcaaacatccatgaaatgaaatggtata 46461898  T
Q  118 aatggaggctccccaaatggagcaaagatgcac 150  Q
    ||||||||||| |  ||||||||||||||||||    
T  46461897 aatggaggctctcttaatggagcaaagatgcac 46461865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 39232257 - 39232367
Alignment:
Q  42 ttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagca 141  Q
    |||||||| |||||||||||| ||| || ||| ||| || || |||||||| ||||||| ||||| ||| ||  ||||||||||||| | ||||||||||    
T  39232257 ttttctaaaccttttaatctcggcctttggttctattttagcaacatgtcacacatccaagaagtaaaaaggagtaaatggaggctctctaaatggagca 39232356  T
Q  142 aagatgcactc 152  Q
    |||||| ||||    
T  39232357 aagatggactc 39232367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 34936851 - 34936715
Alignment:
Q  16 tttttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggta 115  Q
    ||||| ||||| | |||| |||||| | |||||| |  |||||||  ||||||| ||||||| |||||||||||||| | ||| ||||||||||| || |    
T  34936851 tttttttttttgactaaacaaatgcatattctaaactctttaatccaagccattggttttatttttgccacatgtcacaaatctatgaagtgaaaaggga 34936752  T
Q  116 taaatggaggctccccaaatggagcaaagatgcactc 152  Q
    ||||||||||      |||||||||||||||||||||    
T  34936751 taaatggaggtatggtaaatggagcaaagatgcactc 34936715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 8923577 - 8923696
Alignment:
Q  35 aaatgctttttctaagccttttaatctcagccattagttttata-tttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaa 133  Q
    |||||| ||||| || |||||||||| ||||| || ||||| || |||||||||||||| |||||||||| |  ||||||  |||||||||    |||||    
T  8923577 aaatgcattttccaacccttttaatcccagcccttggttttctaatttgccacatgtcacacatccatgatggtaaatggggtaaatggagcaaacccaa 8923676  T
Q  134 atggagcaaagatgcactcc 153  Q
    |||||||||||||| |||||    
T  8923677 atggagcaaagatggactcc 8923696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 3537184 - 3537092
Alignment:
Q  150 ctcccaaaacgctccccttccattatctcatatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||| | ||||||| ||||| ||   |||||||||||||| |||||| |||||||  ||| || ||||||||||||||||| |||||||    
T  3537184 ctcccaaagccctcccctcccattttcctctatttcttccacttactcattccttttttctaaagccttcccctcccttcccctccaaactcg 3537092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 42583406 - 42583452
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  42583406 tatttcttccacttgctcattccttttttccaaaaccctcccctccc 42583452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 53620235 - 53620173
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||| |||||||||| || ||||||| |||| ||||| |||||||||||||| |||||||    
T  53620235 tatttctcccacttgctccttccttttttccaaagccctcacctcccttcccctccaaactcg 53620173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 2420611 - 2420550
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||| ||||||||||||| || ||||||| |||| ||||||||||| |||||||| ||||||    
T  2420611 tattacttccacttgctccttcctttttttcaaaaccctcccctccattcccctctaaactc 2420550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 32858777 - 32858713
Alignment:
Q  180 tatttcttccacttgctcatt--tcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||||||||||  | |||||| |||| ||||||||| |||||||||| |||||||    
T  32858777 tatttcttccacttgctcattccttttttttccaaacccctccccttccttcccctccaaactcg 32858713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 39229515 - 39229402
Alignment:
Q  39 gctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatgga 138  Q
    ||||||||||| |||||||||||||| | || ||| ||| || ||||||||||| ||||| | ||||  ||| ||  ||||||||  ||| | |||||||    
T  39229515 gctttttctaaaccttttaatctcagtctttggttctattttagccacatgtcacacatcaaagaagcaaaaaggagtaaatggaaactctctaaatgga 39229416  T
Q  139 gcaaagatgcactc 152  Q
    ||||||||| ||||    
T  39229415 gcaaagatggactc 39229402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 47789581 - 47789642
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || |||||||  | | |||||||||||||||||||| ||||||    
T  47789581 tatttcttccacttgctccttccttttttctacaaccctcccctcccttcccctccaaactc 47789642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 49183638 - 49183577
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||||||||||||||| ||||||| | || || |||||||| |||||||| ||||||    
T  49183638 tatttcttccacttgctcattccttttttcccaaaccttcccctccattcccctccaaactc 49183577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 55439530 - 55439485
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||    
T  55439530 tatttcttccacttgctcattccttttttccaaaaccctcccctcc 55439485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 40809659 - 40809579
Alignment:
Q  72 ttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactc 152  Q
    |||||| |||||||| ||||| ||||||||||  | |||||| |||||| ||||   |||||||||||||||||| |||||    
T  40809659 ttttatttttgccacgtgtcacacatccatgacttaaaatggaataaattgaggaaacccaaatggagcaaagatacactc 40809579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 7267445 - 7267508
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttata-tttgccacatgtcaaacatccatga 103  Q
    |||||| || |||||||||||||||| || ||||| || |||||||||||||| ||||||||||    
T  7267445 tttttccaacccttttaatctcagcctttggttttctattttgccacatgtcacacatccatga 7267508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 17642536 - 17642482
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctc 234  Q
    |||||||||||||||||  || ||||||| |||| |||||||||||| |||||||    
T  17642536 tatttcttccacttgcttcttccttttttccaaaaccctcccctcccctcccctc 17642482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 18257807 - 18257869
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||| ||| ||||||| ||||| |||| | ||||||||| |||||||| |||||||    
T  18257807 tatttcttccatttgttcatttcctttttccaaaactctcccctcctttcccctccaaactcg 18257869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 35283034 - 35282973
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||  ||| ||||||| || ||||||||| |||||||||| |||||||    
T  35283034 tatttcttccacttgctc-cttcctttttaccaaaccctccccttccttcccctccaaactcg 35282973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 41326491 - 41326608
Alignment:
Q  35 aaatgctttttctaagccttttaatctcagccattagttttat-atttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaa 133  Q
    |||||| ||||| || |||||||||| ||||| || ||||| | ||||||||||||||| |||||||||| |  |||| |  |||||||||    |||||    
T  41326491 aaatgcattttccaacccttttaatc-cagcccttggttttctgatttgccacatgtcacacatccatgatggtaaattgggtaaatggagcaaacccaa 41326589  T
Q  134 atggagcaaagatgcactc 152  Q
    |||||||||||||| ||||    
T  41326590 atggagcaaagatggactc 41326608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 50107683 - 50107617
Alignment:
Q  38 tgctttttctaagccttttaatctcagccattagttttatattt-gccacatgtcaaacatccatga 103  Q
    ||||||||| || | |||||||||||||| || ||||| ||||| ||||||||||| ||||||||||    
T  50107683 tgctttttccaacctttttaatctcagcccttggttttctattttgccacatgtcacacatccatga 50107617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 1133059 - 1133123
Alignment:
Q  180 tatttcttccacttgctcatttctttttta--caaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||| |||||||||||||| |||||||   |||| |||||||||||||||||||  |||||||    
T  1133059 tatttcgtccacttgctcattccttttttttccaaacccctcccctcccttcccctacaaactcg 1133123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 29623184 - 29623120
Alignment:
Q  180 tatttcttccacttgctcatttctttttt--acaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||||||| || |||||||   |||| |||||||||| ||||||||| |||||||    
T  29623184 tatttcttccacttgctccttcctttttttctcaaaaccctcccctctcttcccctctaaactcg 29623120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 33982854 - 33982899
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||    
T  33982854 tatttcttccacttgctccttcctttttttcaaaaccctcccctcc 33982899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 36796369 - 36796324
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||    
T  36796369 tatttcttccacttgctccttccttttttccaaaaccctcccctcc 36796324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 40613733 - 40613870
Alignment:
Q  17 ttttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtat 116  Q
    |||||||||||| |||| || || || |  ||| ||| ||||| |||||| ||  ||| |||| |||||||||||| ||||| |  || ||||  || ||    
T  40613733 ttttatttttcattaaacaagtgtttatgttaaacctgttaatttcagcccttgatttaatatgtgccacatgtcagacatctacaaaatgaacagggat 40613832  T
Q  117 aaatggaggctccccaaatggagcaaagatgcactccc 154  Q
    |||||||||||  | |||||||||||||||| ||||||    
T  40613833 aaatggaggcttgctaaatggagcaaagatgaactccc 40613870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 41962110 - 41962155
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||    
T  41962110 tatttcttccacttgctccttccttttttccaaaaccctcccctcc 41962155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 55444569 - 55444650
Alignment:
Q  72 ttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactcc 153  Q
    ||||| ||||||||||||||| ||||| || |||||||| || ||||||||||  | |  ||||| |||||||||| |||||    
T  55444569 ttttacatttgccacatgtcacacatcaataaagtgaaaagggataaatggagcattcttaaatgaagcaaagatggactcc 55444650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 17057230 - 17057146
Alignment:
Q  25 ttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaa 109  Q
    ||||||||| || || |||||| || ||||||||||||| || || |||| || |||||||| ||||| ||||| | ||||||||    
T  17057230 ttcagtaaacaagtgttttttccaaaccttttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaagaagtgaa 17057146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 29984783 - 29984894
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagc 140  Q
    |||||| |||||||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||| |||||||||||||||||| | ||| | |||    
T  29984783 tttttcgaagccttttaatctcagccattggttttttatttttcacatgtcaaacatccatgaagtgaattggtataaatggaggctctctaaaggaagc 29984882  T
Q  141 aaagatgcactc 152  Q
    ||||||||||||    
T  29984883 aaagatgcactc 29984894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 19778730 - 19778822
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaag 144  Q
    |||||||||||| || ||| ||||| ||||||||||||||||||||| || |||| ||| || ||||| ||||||| |  |||||||| ||||    
T  19778730 cttttaatctcaacccttatttttacatttgccacatgtcaaacatcaataaagtaaaaaggaataaacggaggcttcttaaatggaggaaag 19778822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 33529834 - 33529736
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactc 152  Q
    |||||||||||||| || ||||||  ||||||||||||||  |||| ||||  |||||||| |||||| || ||| || |||||||||||||||| ||||    
T  33529834 ttttaatctcagcccttcgttttag-tttgccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatgaactc 33529736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 10437932 - 10437870
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || ||| ||||||||||||| |||||||    
T  10437932 tatttcttccacttgctcattccttttttcccaagccttcctctcccttcccctccaaactcg 10437870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 35683608 - 35683670
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || ||||||||||||||||  |||||||    
T  35683608 tatttcttccacttgctcattccttttttcctaaaccttcccctcccttccccttcaaactcg 35683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 3676644 - 3676705
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||| |||||| ||||||| ||| ||||| |||||| |||||||| ||||||    
T  3676644 tatttcttccactttctcattcctttttttcaagtcccttccctcctttcccctctaaactc 3676705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 5772854 - 5772915
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||||||  |||||| | || || ||||||||||||||||| ||||||    
T  5772854 tatttcttccacttgctcattctttttttcctaagccttcccctcccttcccctccaaactc 5772915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 35701006 - 35700945
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||| ||||||||| || ||||||| |||| |||||||||||| ||||||| ||||||    
T  35701006 tatttctttcacttgctccttccttttttccaaaaccctcccctcccctcccctccaaactc 35700945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 41694950 - 41694878
Alignment:
Q  153 ccaaaacgctccccttccattatctcatatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    ||||||| ||| ||||||| | |||  |||||||||||||||||| || ||||||| |||| |||||||||||    
T  41694950 ccaaaactctctccttccaatgtcttctatttcttccacttgctccttcctttttttcaaaaccctcccctcc 41694878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 1176067 - 1176118
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttccc 231  Q
    |||| ||||||||||||| || ||||||| |||| |||||||||||||||||    
T  1176067 tattccttccacttgctccttccttttttccaaagccctcccctcccttccc 1176118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 38928837 - 38928888
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttccc 231  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||| ||||    
T  38928837 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccc 38928888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 43379443 - 43379553
Alignment:
Q  42 ttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagca 141  Q
    ||||| || |||||||||| || || ||  |||||| |||||||||||||| ||||| | ||  || ||||| |||||||||| || |  ||||||||||    
T  43379443 ttttccaaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 43379542  T
Q  142 aagatgcactc 152  Q
    |||||| ||||    
T  43379543 aagatgaactc 43379553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 2020927 - 2020882
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||    
T  2020927 tatttcttccacttgctccttccttttttccaaaaccctcccctcc 2020882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 3635594 - 3635493
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactc 152  Q
    ||||||||||| || || |||||| |||||||||||||||  |||| ||||  ||||| || | ||||| || || |  |||||||||||||||| ||||    
T  3635594 ttttaatctcaacctttcgttttaaatttgccacatgtcagtcatctatgagatgaaaagggaaaaatgaagtcttcttaaatggagcaaagatggactc 3635495  T
Q  153 cc 154  Q
    ||    
T  3635494 cc 3635493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 4649122 - 4649167
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||||||  |||||| |||| |||||||||||    
T  4649122 tatttcttccacttgctcattctttttttccaaaaccctcccctcc 4649167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 18670979 - 18670918
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||| ||||| ||||| ||||||| | || || ||||||||||||||||| ||||||    
T  18670979 tatttcttcgacttgatcattccttttttccgaagccttcccctcccttcccctccaaactc 18670918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 38302488 - 38302533
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||    
T  38302488 tatttcttccacttgctccttcctttttttcaaaaccctcccctcc 38302533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 35704656 - 35704596
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaact 240  Q
    ||||||||||||||| || || ||||||  |||| |||||||||||||||| ||| |||||    
T  35704656 tatttcttccacttgttccttcctttttcccaaaaccctcccctcccttcctctccaaact 35704596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 16318563 - 16318501
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || |||||||||||||||||||||||||    
T  16318563 tatttcttccacttgctcattccttttttcctaagccttcccctcccttcccctcaaaactcg 16318501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 7182326 - 7182387
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||| ||||||| ||||||    
T  7182326 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctcccctccaaactc 7182387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 39310496 - 39310396
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcact 151  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||| || |  |||||||| |||||| ||||   |  |||||||||||||||| |||    
T  39310496 cttttaatctcagccattggttttattttttccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaagatggact 39310397  T
Q  152 c 152  Q
    |    
T  39310396 c 39310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 9483662 - 9483732
Alignment:
Q  82 gccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactc 152  Q
    ||||||||||| ||||| ||||||||||| || |||||||||  ||   ||||||||||||||||||||||    
T  9483662 gccacatgtcacacatctatgaagtgaaaagggataaatggaacctttgcaaatggagcaaagatgcactc 9483732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 24279860 - 24279799
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||| ||||||||||||| || ||||||| |||| |||||| ||||||||||||| ||||||    
T  24279860 tattccttccacttgctccttccttttttccaaaaccctccactcccttcccctctaaactc 24279799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 56426843 - 56426892
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttc 229  Q
    ||||||||||||||||||||| ||||||| ||||  ||||||||||||||    
T  56426843 tatttcttccacttgctcattcctttttttcaaagtcctcccctcccttc 56426892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 52594732 - 52594820
Alignment:
Q  153 ccaaaacgctccccttccattatctcatatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||| ||| ||||||| | |||  ||||||||| |||| ||| |||||||||| |||| |||||||||||| | ||||| ||||||    
T  52594732 ccaaaaccctctccttccaatgtcttctatttcttcaacttactcctttcttttttccaaaaccctcccctccccttccctccaaactc 52594820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 24484883 - 24484788
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatg 147  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||| || |  |||||| | |||||| ||||   |  ||||||||||||||||    
T  24484883 cttttaatctcagccattggttttattttttccacatgtcacacatctataacttgaaataggataaattgaggaatcttaaatggagcaaagatg 24484788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 13270408 - 13270454
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||    
T  13270408 tatttcttccacttgctccttccttttttccaaaaccctcccctccc 13270454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 33500466 - 33500404
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| |||||||   || || |||||||||||||| || |||||||    
T  33500466 tatttcttccacttgctcattccttttttctcaagccttcccctcccttcccttccaaactcg 33500404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 38317364 - 38317418
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctc 234  Q
    |||||||||||||||||| || ||||||| |||| ||||| |||||| |||||||    
T  38317364 tatttcttccacttgctccttccttttttccaaaaccctctcctcccctcccctc 38317418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 47669754 - 47669708
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    ||||| |||||||||||| |||||||||| |||| ||||||||||||    
T  47669754 tattttttccacttgctcctttctttttttcaaaaccctcccctccc 47669708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 52636707 - 52636645
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||| | ||||||| ||||   ||||| |||||||||||| |||||||    
T  52636707 tatttcttccacttgctcagtccttttttccaaaattctcccatcccttcccctccaaactcg 52636645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 16535637 - 16535576
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||||||| | || |||||||||||  ||||||| ||||||    
T  16535637 tatttcttccacttgctccttccttttttcccaaaccctcccctcctctcccctctaaactc 16535576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 31414816 - 31414917
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcact 151  Q
    |||||||||||| || ||  ||||| ||||||||||||||| | ||| || |||||||| || |||||| ||||   |  |||||||||||||||| |||    
T  31414816 cttttaatctcaacccttctttttacatttgccacatgtcacatatcaataaagtgaaaaggaataaattgaggaaacttaaatggagcaaagatggact 31414915  T
Q  152 cc 153  Q
    ||    
T  31414916 cc 31414917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 32159510 - 32159591
Alignment:
Q  72 ttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactcc 153  Q
    |||||| ||| |||||||||| ||||||| | | ||||||||  ||||| ||||   || ||||||||||||||||||||||    
T  32159510 ttttattttttccacatgtcacacatccaaggaatgaaatggggtaaattgaggaaacctaaatggagcaaagatgcactcc 32159591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 38365975 - 38365914
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || |||||||  ||| | |||||||||| ||||||| ||||||    
T  38365975 tatttcttccacttgctccttccttttttctaaaactctcccctcccctcccctccaaactc 38365914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 41363947 - 41364008
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||||||| |||| || | ||||||| ||||||| ||||||    
T  41363947 tatttcttccacttgctccttccttttttccaaaaccgttccctcccctcccctccaaactc 41364008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 46177062 - 46177123
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||||||||| || ||  |||||| |||| |||||||||||||| ||||| ||||||    
T  46177062 tatttcttccacttgttccttctttttttccaaaaccctcccctccctttccctccaaactc 46177123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 48830950 - 48830995
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||    
T  48830950 tatttcttccacttgctccttccttttttccaaaaccctcccctcc 48830995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 16422883 - 16422804
Alignment:
Q  161 ctccccttccattatctcatatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||||||| ||   ||||||||||| ||||||||| ||||||| | || |  ||||||||||||||||| ||||||    
T  16422883 ctccccttccattttcctttatttcttccagttgctcatt-ctttttttccaagctttcccctcccttcccctccaaactc 16422804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 2581259 - 2581193
Alignment:
Q  20 tatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccac 86  Q
    |||||| ||||||| ||||||||||| ||||| ||||||||||| ||||| |||| |||||||||||    
T  2581259 tattttccagtaaacaaatgctttttttaagctttttaatctcaaccattggtttcatatttgccac 2581193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 3635611 - 3635673
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||| |||||||||||||||||||| |||| ||||| | |||||||||||| |||||||    
T  3635611 tatttctttcacttgctcatttcttttttccaaaaccctctcatcccttcccctccaaactcg 3635673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 42503868 - 42503990
Alignment:
Q  30 taaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctcc 129  Q
    ||||||| ||| ||||| || |||||||||| ||||||||| |||||| ||| |||||||||| ||||| ||||  || |||||  ||||| ||||   |    
T  42503868 taaagaattgccttttccaaaccttttaatcacagccattaattttattttttccacatgtcacacatctatgatatggaatggggtaaattgaggaagc 42503967  T
Q  130 ccaaatggagcaaagatgcactc 152  Q
    | |||||||||||||||| ||||    
T  42503968 ctaaatggagcaaagatggactc 42503990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 3404708 - 3404769
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||| ||||||| ||||||    
T  3404708 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctcccctccaaactc 3404769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 39309638 - 39309731
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagat 146  Q
    |||||||||||||| ||  ||||   ||||||||||||||| |||| |||| |||||| || ||||||||||| | || |||||||||||||||    
T  39309638 ttttaatctcagcccttcatttttgttttgccacatgtcaatcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagat 39309731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 23962943 - 23962885
Alignment:
Q  183 ttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||| |||||||||||||| |||| |||||| |||||||| ||||||||||||    
T  23962943 ttcttccacttactcatttcttttttccaaa-ccctcctctcccttctcctcaaaactcg 23962885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 39308767 - 39308668
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactc 152  Q
    |||||||| ||||| ||  |||||  ||||||||||||||  |||| |||| |||||| || ||||||||||| | || |||||||||||||||| ||||    
T  39308767 ttttaatcccagcccttcattttagttttgccacatgtcagtcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagatggactc 39308668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 30146989 - 30147127
Alignment:
Q  9 gcgtgtgtttttatttttcagtaaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccac-atgtcaaacatccatgaagtg 107  Q
    ||||||| |||| ||||||  ||||||| || |||| |||| |||||||||||||||||||| ||| || ||| |||| |||||| |||| || ||||||    
T  30146989 gcgtgtgcttttttttttctttaaagaattgtttttcctaaaccttttaatctcagccattaatttcattttttccactatgtcacacattcaagaagtg 30147088  T
Q  108 aaatggtataaatggaggctccccaaatggagcaaagat 146  Q
       ||| |||||| ||||||    |||||||||||||||    
T  30147089 ggctgggataaattgaggctttgtaaatggagcaaagat 30147127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 1942168 - 1942228
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||||||||| || || ||||||| |||| |||||||||||||||||||| ||||||    
T  1942168 tatttcttccacttgatccttcctttttt-caaaaccctcccctcccttcccctccaaactc 1942228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 42578809 - 42578748
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatgg 113  Q
    ||||||||||||||||||  |||||| |||||||||||||| ||||| ||||  ||||||||    
T  42578809 cttttaatctcagccattgattttatttttgccacatgtcatacatctatgacttgaaatgg 42578748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 10910965 - 10911033
Alignment:
Q  36 aatgctttttctaagccttttaatctcagccattagttttata-tttgccacatgtcaaacatccatga 103  Q
    ||||||||||| || ||||||||||| ||||||| ||||| || ||| |||||||||| ||||||||||    
T  10910965 aatgctttttccaacccttttaatcttagccattggttttctattttaccacatgtcacacatccatga 10911033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 38443149 - 38443062
Alignment:
Q  38 tgctttttctaagccttttaatctcagccattagttttatattt-gccacatgtcaaacatccatgaagtgaaatggtataaatggag 124  Q
    ||||||||| || ||||||||||||| || || ||||| ||||| ||||||||||| |||||||||| |  ||||||  |||||||||    
T  38443149 tgctttttccaacccttttaatctcaacccttggttttctattttgccacatgtcacacatccatgatggtaaatggggtaaatggag 38443062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 43235489 - 43235430
Alignment:
Q  94 acatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactcc 153  Q
    ||||| ||||||||||| || |||||||||||||    ||||||||||||||||||||||    
T  43235489 acatctatgaagtgaaaagggataaatggaggcttggtaaatggagcaaagatgcactcc 43235430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 6764 - 6718
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||    
T  6764 tatttcttccacttgctccttccttttttccaaaaccctcccctccc 6718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 4734631 - 4734677
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||    
T  4734631 tatttcttccacttgctccttccttttttccaaaaccctcccctccc 4734677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 21173992 - 21174054
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || |  ||||||||||||| ||| |||||||    
T  21173992 tatttcttccacttgctcattccttttttcctaagcattcccctcccttccactccaaactcg 21174054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 26772776 - 26772838
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || ||| ||||||| ||||| |||||||    
T  26772776 tatttcttccacttgctcattccttttttcctaagccttcctctccctttccctccaaactcg 26772838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 29611939 - 29611893
Alignment:
Q  179 atatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||||||||||||||   ||| |||||||||||    
T  29611939 atatttcttccacttgctcatttctttttccaaaaaccctcccctcc 29611893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 31149870 - 31149808
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||||||||||  | |||| |||| | |||| ||||||||||||| |||||||    
T  31149870 tatttcttccacttgctcattcatgttttccaaaacactccactcccttcccctccaaactcg 31149808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 36906133 - 36906087
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||    
T  36906133 tatttcttccacttgctccttccttttttccaaaaccctcccctccc 36906087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 37659666 - 37659719
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccct 233  Q
    |||||||||||||  ||| || ||||||| |||| |||||||||||||||||||    
T  37659666 tatttcttccactcactccttccttttttccaaaaccctcccctcccttcccct 37659719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 42503148 - 42503031
Alignment:
Q  30 taaagaaatgctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctcc 129  Q
    ||||||| ||| ||||| || |||||||||| ||||||||  |||||| ||| | |||||||| ||||| ||||  ||||||||  ||||| ||||   |    
T  42503148 taaagaattgccttttccaaaccttttaatcacagccattgattttattttttctacatgtcacacatctatgatatgaaatggggtaaattgaggaaac 42503049  T
Q  130 ccaaatggagcaaagatg 147  Q
      ||||||||||||||||    
T  42503048 ttaaatggagcaaagatg 42503031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 1840341 - 1840385
Alignment:
Q  181 atttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    ||||||||||||||||| || ||||||| |||| |||||||||||    
T  1840341 atttcttccacttgctccttccttttttccaaacccctcccctcc 1840385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 41889435 - 41889323
Alignment:
Q  41 tttttctaagccttttaatctcagccattagtttt-atatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggag 139  Q
    |||||| || |||||||||||||||| ||  |||| || |||||||||||||| |||||||   ||||||| ||  ||||||||| || |  |||||||     
T  41889435 tttttccaacccttttaatctcagcccttgattttcatttttgccacatgtcacacatccaaacagtgaaaaggagtaaatggagccttcttaaatggaa 41889336  T
Q  140 caaagatgcactc 152  Q
    |||||||| ||||    
T  41889335 caaagatggactc 41889323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 1567227 - 1567165
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || ||||||||||||||||| |||||||    
T  1567227 tatttcttccacttgctcattccttttttcctaagccttcccctcccttcccctccaaactcg 1567165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 26713809 - 26713747
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||||||| || |||| || |||| |||||||||||||||||||| |||||||    
T  26713809 tatttcttccacttgctccttcctttattccaaaaccctcccctcccttcccctccaaactcg 26713747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 2365732 - 2365793
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||| ||||||| ||||||    
T  2365732 tatttcttccacttgctccttcctttttttcaaaaccctcccctcccctcccctccaaactc 2365793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 18065817 - 18065718
Alignment:
Q  54 tttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactcc 153  Q
    |||||||  ||||||| ||||||| |||||||||||||| | ||| || |||| ||| || ||||||||||| |    ||||||||||||||||||||||    
T  18065817 tttaatcctagccattggttttatttttgccacatgtcatatatctataaagtaaaaagggataaatggaggtttggtaaatggagcaaagatgcactcc 18065718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 26481262 - 26481323
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||  || ||||||| |||| |||||||||||| ||||||| ||||||    
T  26481262 tatttcttccacttgctacttcctttttttcaaaaccctcccctcccctcccctccaaactc 26481323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 26574530 - 26574576
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||    
T  26574530 tatttcttccacttgctccttccttttttccaaaaccctcccctccc 26574576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 36886816 - 36886754
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || ||||||||||||||||| |||||||    
T  36886816 tatttcttccacttgctcattccttttttcccaagccttcccctcccttcccctccaaactcg 36886754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 52073582 - 52073645
Alignment:
Q  180 tatttcttccacttgctcatttctttttta-caaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||||||| || |||||||  |||| |||||||||||||||||||| |||||||    
T  52073582 tatttcttccacttgctccttcctttttttgcaaacccctcccctcccttcccctccaaactcg 52073645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 36269689 - 36269627
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    ||||||||||||||||||||| ||||||| | || || ||||||| ||||||||| |||||||    
T  36269689 tatttcttccacttgctcattccttttttcccaagccttcccctcacttcccctccaaactcg 36269627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 26940552 - 26940491
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||  ||||||| ||||||    
T  26940552 tatttcttccacttgctccttccttttttccaaaaccctcccctcctctcccctccaaactc 26940491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 27499930 - 27499877
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccct 233  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||| ||||||    
T  27499930 tatttcttccacttgctccttcctttttttcaaaaccctcccctcccctcccct 27499877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 43572086 - 43572147
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||||||||||||||| ||||||| |||| | || ||||||| ||||||| ||||||    
T  43572086 tatttcttccacttgctcattcctttttttcaaaactctgccctcccctcccctccaaactc 43572147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 39179250 - 39179302
Alignment:
Q  189 cacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||| || ||||||| |||| |||||||||||||||||||| ||||||    
T  39179250 cacttgctccttccttttttccaaaaccctcccctcccttcccctccaaactc 39179302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 50586994 - 50586934
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaact 240  Q
    |||||||||||||||||| || ||||||| |||| | |||| ||||||||||||| |||||    
T  50586994 tatttcttccacttgctccttccttttttccaaagctctcctctcccttcccctccaaact 50586934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 13061536 - 13061595
Alignment:
Q  181 atttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaact 240  Q
    ||||||||||||||||| || ||||||| |||| |||| ||||||| ||||||| |||||    
T  13061536 atttcttccacttgctccttccttttttccaaaacccttccctcccctcccctctaaact 13061595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 42488762 - 42488805
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccct 223  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||    
T  42488762 tatttcttccacttgctcattccttttttccaaaaccctcccct 42488805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 1688351 - 1688397
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||    
T  1688351 tatttcttccacttgctccttccttttttccaaaaccctcccctccc 1688397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 11017546 - 11017484
Alignment:
Q  179 atatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||||||||||||| || ||||||| ||||  ||| ||||||| ||||||| ||||||    
T  11017546 atatttcttccacttgctccttccttttttccaaaatccttccctcccctcccctccaaactc 11017484  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 17556614 - 17556552
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||| ||| || ||||||| |  | |||||||||||||||||||| |||||||    
T  17556614 tatttcttccacttactccttcctttttttctgaaccctcccctcccttcccctccaaactcg 17556552  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 17688284 - 17688238
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||    
T  17688284 tatttcttccacttgctccttccttttttccaaaaccctcccctccc 17688238  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 18526899 - 18526973
Alignment:
Q  79 tttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatgcactcc 153  Q
    ||||||||||||||  |||| |||| |||||| || ||||||| ||||| || |||||||||||| ||| |||||    
T  18526899 tttgccacatgtcagtcatctatgaggtgaaaagggataaatgaaggcttcctaaatggagcaaatatggactcc 18526973  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 25708500 - 25708562
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||| ||| || ||||||  | || ||||||||||||||||||||| ||||||    
T  25708500 tatttcttccacttactccttcctttttatctaaaccctcccctcccttcccctcataactcg 25708562  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 49103086 - 49103148
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||||||||||| ||| |  ||||||| | || |||||||||||||||||||| |||||||    
T  49103086 tatttcttccacttactcctccctttttttccaaaccctcccctcccttcccctccaaactcg 49103148  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 50476492 - 50476446
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctccc 226  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||    
T  50476492 tatttcttccacttgctccttccttttttccaaaaccctcccctccc 50476446  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 12293756 - 12293695
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    ||||||||||||||| || || ||||||| |||| |||||||||| | ||||||| ||||||    
T  12293756 tatttcttccacttgatccttccttttttccaaaaccctcccctctcctcccctccaaactc 12293695  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 23871598 - 23871643
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||    
T  23871598 tatttcttccacttgctccttccttttttccaaaaccctcccctcc 23871643  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 40707333 - 40707394
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||||||| |||| | || ||||| ||||||||| ||||||    
T  40707333 tatttcttccacttgctccttccttttttccaaaactcttccctctcttcccctccaaactc 40707394  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 47905824 - 47905885
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||| ||| || ||||||| |||| ||||||||| || ||||||| ||||||    
T  47905824 tatttcttccacttactccttccttttttccaaaaccctccccttccctcccctccaaactc 47905885  T

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Target: scaffold1163 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 2032 - 1942
Alignment:
Q  152 cccaaaacgctccccttccattatctcatatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaactcg 242  Q
    |||||| | ||||||| ||||| |||  |||||||||||||||||| || ||||||| ||||  | |||| |||||||||||| |||||||    
T  2032 cccaaagccctcccctcccattttcttctatttcttccacttgctccttcctttttttcaaagtcttcccttcccttcccctccaaactcg 1942  T

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Target: scaffold0151 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 20851 - 20794
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatc 98  Q
    |||||| || ||||||||||||||||||| ||||||| ||| |||||||||| |||||    
T  20851 tttttccaaaccttttaatctcagccattggttttatttttaccacatgtcacacatc 20794  T

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Target: scaffold0136 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 2157 - 2217
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcccttcccctcaaaact 240  Q
    ||||||||||||||||||||| |||||||   || || ||||||||||||||||| |||||    
T  2157 tatttcttccacttgctcattccttttttcttaagccttcccctcccttcccctccaaact 2217  T

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Target: scaffold0330 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 13231 - 13305
Alignment:
Q  73 tttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccccaaatggagcaaagatg 147  Q
    |||| ||||||||||||||| ||||| || |||||||| || |||||| ||||   || ||||||||||||||||    
T  13231 tttaaatttgccacatgtcacacatcaataaagtgaaaaggaataaattgaggaaacctaaatggagcaaagatg 13305  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 82742 - 82680
Alignment:
Q  180 tatttcttccacttgctcatttcttttttac-aaatccctcccctcccttcccctcaaaactc 241  Q
    |||||||||||||||||| || ||||||| | ||| |||||||||||||| ||||| ||||||    
T  82742 tatttcttccacttgctccttcctttttttccaaagccctcccctcccttaccctccaaactc 82680  T

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Target: scaffold0952 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 3807 - 3852
Alignment:
Q  180 tatttcttccacttgctcatttcttttttacaaatccctcccctcc 225  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||    
T  3807 tatttcttccacttgctccttccttttttccaaaaccctcccctcc 3852  T

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