View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20531_low_11 (Length: 289)
Name: NF20531_low_11
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20531_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 53608691 - 53608956
Alignment:
| Q |
18 |
agtaatgttgcattgtgttgtatgtatactactattttgtcatttgattaagatcaaacagttgagattctaagctctcaatttgttattatcaagatgt |
117 |
Q |
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| T |
53608691 |
agtaatgttgtattgtgttgtatgtacactactattttgtcatttgattaagatcaaacagttgagattctaagctctcaatttgttattatcaagatgt |
53608790 |
T |
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| Q |
118 |
aaattgtccaatctctatccattagcttagttgaactaactagttaactctaaatatggttttgccaatcaatcaggttatttaagagtcatgaactcat |
217 |
Q |
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| T |
53608791 |
aaattgtccaatctctatccattagcttagttgaactaactagttaactctaaatatggttttgccaatcaatcaggctatttaagagtcatgaactcat |
53608890 |
T |
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| Q |
218 |
gattttaaataaagaataaatgaatataagcatatggataagttgaaaatggaaaagtattatcta |
283 |
Q |
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| T |
53608891 |
gattttaaataaagaataaatgaatataagcatatggataagttgaaaatggaaaagtattatcta |
53608956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 37223129 - 37223183
Alignment:
| Q |
125 |
ccaatctctatccattagcttagttgaactaactagttaactctaaatatggttt |
179 |
Q |
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| T |
37223129 |
ccaatctctatccattaggttagatgaactaaccagttaactctaaaaatggttt |
37223183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 37210011 - 37210094
Alignment:
| Q |
64 |
attaagatcaaacagttgagattctaagctctcaatttgttattatcaagatgtaaattgtccaatctctatccattagcttag |
147 |
Q |
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| T |
37210011 |
attaagatcatacggttaagattctgagttttcgatttgttataatcaagatgtgaaccgtccaatctctatccatcagcttag |
37210094 |
T |
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