View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20531_low_14 (Length: 253)
Name: NF20531_low_14
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20531_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 5950771 - 5950994
Alignment:
| Q |
12 |
agagacagagggaaaatgatgataacgacgaggacttgcattattctcgtcgtctggataactgttcgtcctatctggaagtagcattgatatctctgct |
111 |
Q |
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| T |
5950771 |
agagacagagggaaaatgatgataacgacgaggacttgcattattctcgtcgtcttgataactgttcgtcctatctggaagtagcattgatatctctgct |
5950870 |
T |
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| Q |
112 |
tcaatcatagtagcaatttcagaaggatcccaatttgtgatgtccaactcttttaccatctccttcgcaacatcaattggggtgtcagtgaaaatgtcaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950871 |
tcaatcatagtagcaatttcagaaggatcccaatttgtgatgtccaactcttttaccatctccttcgcaacatcaattggggtgtcagtgaaaatgtcaa |
5950970 |
T |
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| Q |
212 |
aggggaaatatacattcctagcag |
235 |
Q |
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|||||||||||||||||||||||| |
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| T |
5950971 |
aggggaaatatacattcctagcag |
5950994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 22396150 - 22396309
Alignment:
| Q |
72 |
actgttcgtcctatctggaagtagcattgatatctctgcttcaatcatagtagcaatttcagaaggatcccaatttgtgatgtccaactcttttaccatc |
171 |
Q |
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||||||| || ||||||| || ||||| |||||||| ||||||||||| |||||| ||||||||| || ||| || ||||||||||||||| |||||| |
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| T |
22396150 |
actgttcctcgtatctggcagcagcatggatatctc--cttcaatcatattagcaacttcagaaggctctcaaactgcgatgtccaactctttcaccatc |
22396247 |
T |
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| Q |
172 |
tccttcgcaacatcaattggggtgtcagtgaaaatgtcaaaggg-gaaatatacattcctag |
232 |
Q |
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| T |
22396248 |
tccattgcaacatcaattggggtgccggtaaaactgtcaaagggaaaaatgtacattcctag |
22396309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 31951027 - 31951143
Alignment:
| Q |
115 |
atcatagtagcaatttcagaaggatcccaatttgtgatgtccaactcttttaccatctccttcgcaacatcaattggggtgtcagtgaaaatgtcaaagg |
214 |
Q |
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|||||| | ||||| ||| |||||||||||| | || ||||| ||||||||||||||| | ||||||||||| || || ||||||| ||| ||||| | |
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| T |
31951027 |
atcatatttgcaatatcaaaaggatcccaatcagaaatctccaattcttttaccatctccattgcaacatcaatgggagtatcagtgagaatatcaaatg |
31951126 |
T |
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| Q |
215 |
ggaaatatacattccta |
231 |
Q |
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| T |
31951127 |
gaaaatatacattccta |
31951143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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