View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20531_low_18 (Length: 236)
Name: NF20531_low_18
Description: NF20531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20531_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 684646 - 684444
Alignment:
| Q |
15 |
cagagaagaaaggccagaaaagaaaactggaacaacaagaagaacaattccaacaagacacacagatctcccttcctctcaccggagacgctctcgacgc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
684646 |
cagagaagaaaggccagaaaagaaaactggaacaacaagaagaacaattccaacaagtcacacagatctcccttcctctcaccggagacgctctcgacgc |
684547 |
T |
|
| Q |
115 |
cgttctctccgacgtcaatcaacacgtttcaattctcctttcatctttctcatccaacgaattcgatagagcttccgctaaacgcgccactcacgctctc |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
684546 |
cgttctctccgacgtcgatcaacacgtttcaattctcctttcatctttctcatccaacgaattcgatagagcttccgctaaacgcgccactcacgctctc |
684447 |
T |
|
| Q |
215 |
gcc |
217 |
Q |
| |
|
||| |
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|
| T |
684446 |
gcc |
684444 |
T |
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